Chlorine in PDB 8uss: IL17A Complexed to Compound 7

Protein crystallography data

The structure of IL17A Complexed to Compound 7, PDB code: 8uss was solved by M.A.Argiriadi, A.L.Ramos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.78 / 1.47
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 36.6, 50.38, 157.36, 90, 90, 90
R / Rfree (%) 22.1 / 23.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the IL17A Complexed to Compound 7 (pdb code 8uss). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the IL17A Complexed to Compound 7, PDB code: 8uss:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8uss

Go back to Chlorine Binding Sites List in 8uss
Chlorine binding site 1 out of 3 in the IL17A Complexed to Compound 7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of IL17A Complexed to Compound 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:18.7
occ:1.00
CL18 A:XCW201 0.0 18.7 1.0
C17 A:XCW201 1.7 14.5 1.0
C19 A:XCW201 2.8 19.8 1.0
C16 A:XCW201 2.8 16.2 1.0
H43 A:XCW201 3.1 19.4 1.0
CL20 A:XCW201 3.5 25.1 1.0
CG1 A:VAL142 3.7 18.8 1.0
N21 A:XCW201 3.9 17.1 1.0
C15 A:XCW201 3.9 16.1 1.0
CG2 A:VAL140 4.0 18.0 1.0
CG2 A:ILE119 4.2 18.3 1.0
CD1 A:ILE119 4.5 23.4 1.0
CB A:VAL142 4.5 17.5 1.0
H44 A:XCW201 4.8 20.5 1.0

Chlorine binding site 2 out of 3 in 8uss

Go back to Chlorine Binding Sites List in 8uss
Chlorine binding site 2 out of 3 in the IL17A Complexed to Compound 7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of IL17A Complexed to Compound 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:25.1
occ:1.00
CL20 A:XCW201 0.0 25.1 1.0
C19 A:XCW201 1.7 19.8 1.0
N21 A:XCW201 2.6 17.1 1.0
C17 A:XCW201 2.8 14.5 1.0
H44 A:XCW201 2.8 20.5 1.0
O A:SER141 3.0 18.3 0.2
O A:SER141 3.0 18.5 0.8
O A:TRP90 3.4 18.4 1.0
CL18 A:XCW201 3.5 18.7 1.0
CA A:VAL142 3.6 14.9 1.0
C A:SER141 3.6 17.8 0.2
C A:SER141 3.6 17.8 0.8
CG1 A:VAL142 3.7 18.8 1.0
C15 A:XCW201 3.8 16.1 1.0
CG2 A:VAL140 3.9 18.0 1.0
C16 A:XCW201 3.9 16.2 1.0
CB A:VAL140 4.0 19.1 1.0
N A:VAL142 4.0 15.9 1.0
CB A:VAL142 4.1 17.5 1.0
CA A:GLU91 4.3 16.5 1.0
C A:TRP90 4.4 17.0 1.0
CG A:GLU91 4.4 18.5 1.0
N A:SER141 4.5 16.7 0.8
N A:SER141 4.5 16.8 0.2
CG2 A:ILE89 4.6 21.8 1.0
C A:VAL140 4.6 17.6 1.0
C A:VAL142 4.7 17.4 1.0
CA A:SER141 4.8 15.0 0.8
CA A:SER141 4.8 15.1 0.2
N A:GLU91 4.8 14.3 1.0
CG1 A:VAL140 4.8 19.4 1.0
O A:HOH333 4.8 20.4 1.0
CB A:GLU91 4.8 15.5 1.0
O A:VAL142 4.9 19.5 1.0
H43 A:XCW201 4.9 19.4 1.0
CA A:VAL140 5.0 15.6 1.0

Chlorine binding site 3 out of 3 in 8uss

Go back to Chlorine Binding Sites List in 8uss
Chlorine binding site 3 out of 3 in the IL17A Complexed to Compound 7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of IL17A Complexed to Compound 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.7
occ:0.74
NE A:ARG78 3.1 23.9 1.0
NH2 A:ARG78 3.1 28.8 1.0
O A:HOH353 3.5 32.8 1.0
CZ A:ARG78 3.5 26.4 1.0
CG2 A:VAL88 4.1 23.9 1.0
CD A:ARG78 4.2 18.6 1.0
CZ2 A:TRP90 4.3 18.8 1.0
O A:HOH365 4.3 40.6 1.0
CG1 A:VAL88 4.3 22.4 1.0
CB A:VAL88 4.6 20.7 1.0
NH1 A:ARG78 4.9 27.5 1.0
CG A:ARG78 4.9 17.5 1.0
NE1 A:TRP90 4.9 17.1 1.0
CE2 A:TRP90 5.0 17.5 1.0

Reference:

A.L.Ramos, E.R.Goedken, K.E.Frank, M.A.Argiriadi, S.Bazzaz, Z.Bian, J.T.C.Brown, P.A.Centrella, H.Chen, J.S.Disch, P.L.Donner, D.B.Duignan, D.Gikunju, S.N.Greszler, M.Guie, S.Habeshian, H.E.Hartl, C.D.Hein, C.W.Hutchins, R.Jetson, A.D.Keefe, H.Khan, A.Olszewski, B.J.Ortiz Cardona, A.Osuma, S.Panchal, R.Phelan, W.Qiu, B.Shotwell, A.Shrestha, M.Srikumaran, Z.Su, C.C.Sun, A.K.Upadhyay, M.D.Wood, H.Wu, R.Zhang, Y.Zhang, G.Zhao, H.Zhu, M.P.Webster. Discovery of Small Molecule Interleukin 17A Inhibitors with Novel Binding Mode and Stoichiometry: Optimization of Dna-Encoded Chemical Library Hits to in Vivo Active Compounds J.Med.Chem. 2024.
ISSN: ISSN 0022-2623
DOI: 10.1021/ACS.JMEDCHEM.3C02397
Page generated: Tue Jul 30 13:21:23 2024

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