Chlorine in PDB 8ux7: Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man

Protein crystallography data

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7 was solved by M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.66 / 2.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.35, 109.414, 126.364, 90, 90, 90
R / Rfree (%) 20.1 / 24.8

Other elements in 8ux7:

The structure of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man also contains other interesting chemical elements:

Potassium (K) 1 atom
Bromine (Br) 2 atoms
Manganese (Mn) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man (pdb code 8ux7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man, PDB code: 8ux7:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8ux7

Go back to Chlorine Binding Sites List in 8ux7
Chlorine binding site 1 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:54.1
occ:1.00
CL A:XMM303 0.0 54.1 1.0
C10 A:XMM303 1.7 56.9 1.0
C13 A:XMM303 2.7 76.2 1.0
C8 A:XMM303 2.7 63.1 1.0
O1 A:XMM303 2.8 48.2 1.0
BR A:XMM303 3.1 75.5 1.0
C7 A:XMM303 3.3 62.0 1.0
C1 A:XMM303 3.5 46.3 1.0
C14 A:XMM303 4.0 65.4 1.0
C9 A:XMM303 4.0 68.8 1.0
C2 A:XMM303 4.0 47.0 1.0
C12 A:XMM303 4.6 70.5 1.0
C11 A:XMM303 4.6 64.0 1.0
O5 A:XMM303 4.8 43.1 1.0
O2 A:XMM303 4.8 42.6 1.0
CD2 A:LEU99 4.9 52.4 1.0
N1 A:XMM303 4.9 64.9 1.0

Chlorine binding site 2 out of 2 in 8ux7

Go back to Chlorine Binding Sites List in 8ux7
Chlorine binding site 2 out of 2 in the Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:69.8
occ:1.00
CL B:XMM303 0.0 69.8 1.0
C10 B:XMM303 1.7 75.4 1.0
C13 B:XMM303 2.7 91.7 1.0
C8 B:XMM303 2.7 77.7 1.0
O1 B:XMM303 2.7 64.6 1.0
BR B:XMM303 3.1 84.7 1.0
C7 B:XMM303 3.2 76.2 1.0
C1 B:XMM303 3.4 62.1 1.0
C2 B:XMM303 3.9 56.3 1.0
C14 B:XMM303 4.0 79.8 1.0
C9 B:XMM303 4.0 82.3 1.0
C12 B:XMM303 4.6 76.9 1.0
C11 B:XMM303 4.6 77.9 1.0
O5 B:XMM303 4.7 59.3 1.0
O2 B:XMM303 4.7 60.0 1.0
CD2 B:LEU99 4.9 93.2 1.0
N1 B:XMM303 4.9 79.5 1.0

Reference:

M.V.Oliveira, G.De Sloover, V.J.S.Osterne, V.R.Pinto-Junior, J.C.Sacramento-Neto, E.J.M.Van Damme, K.S.Nascimento, B.S.Cavada. Dioclea Megacarpa Lectin (Dmega) Complexed with X-Man To Be Published.
Page generated: Tue Jul 30 13:28:28 2024

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