Atomistry » Chlorine » PDB 8u90-8x2p » 8uz7
Atomistry »
  Chlorine »
    PDB 8u90-8x2p »
      8uz7 »

Chlorine in PDB 8uz7: Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome

Protein crystallography data

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7 was solved by R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, J.A.Lopez-Garcia, A.Ochoa-Leyva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.45 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.564, 84.253, 73.739, 90, 92.69, 90
R / Rfree (%) 18.9 / 19.1

Other elements in 8uz7:

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome (pdb code 8uz7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 1 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:16.7
occ:1.00
O A:HOH549 3.1 31.5 1.0
O A:HOH533 3.1 34.1 1.0
NH1 A:ARG53 3.2 13.1 1.0
N A:ASP90 3.3 11.6 1.0
N A:VAL62 3.3 14.9 1.0
CA A:GLY61 3.7 14.8 1.0
CB A:ASP90 3.7 14.0 1.0
O A:VAL62 3.8 15.4 1.0
CG A:ASP90 3.9 29.0 1.0
CA A:CYS89 4.0 17.6 1.0
C A:GLY61 4.0 12.3 1.0
CA A:ASP90 4.1 14.6 1.0
C A:CYS89 4.1 14.8 1.0
OD2 A:ASP90 4.1 30.6 1.0
CD1 A:TRP91 4.2 16.4 1.0
O A:GLY88 4.2 18.5 1.0
CD A:ARG53 4.3 18.7 1.0
CA A:VAL62 4.3 16.1 1.0
CZ A:ARG53 4.4 14.6 1.0
C A:VAL62 4.5 14.4 1.0
OD1 A:ASP90 4.5 25.6 1.0
CB A:VAL62 4.6 15.4 1.0
CB A:CYS89 4.7 15.1 1.0
O A:HOH421 4.7 35.4 1.0
N A:TRP91 4.7 12.1 1.0
NE A:ARG53 4.8 15.1 1.0
C A:ASP90 4.9 14.7 1.0
O A:ILE60 4.9 17.9 1.0
O A:HOH467 4.9 31.3 1.0
N A:GLY61 4.9 17.3 1.0
O A:HOH500 4.9 29.9 1.0

Chlorine binding site 2 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 2 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:18.8
occ:0.85
O A:HOH440 3.0 25.7 1.0
NE2 A:HIS96 3.1 16.9 1.0
CE A:LYS14 3.3 22.7 1.0
NZ A:LYS14 3.5 23.3 1.0
ND2 A:ASN12 3.5 15.6 1.0
CG A:LEU231 3.6 15.3 1.0
CD1 A:LEU231 3.7 15.3 1.0
CB A:ASN12 3.8 11.8 1.0
CD2 A:LEU231 4.0 17.9 1.0
CE1 A:HIS96 4.0 15.3 1.0
CD2 A:HIS96 4.1 13.9 1.0
CG A:ASN12 4.2 18.2 1.0
N A:GLY233 4.2 18.2 1.0
C A:VAL232 4.3 18.8 1.0
O A:VAL232 4.3 16.3 1.0
CA A:GLY233 4.3 18.6 1.0
O A:LEU231 4.7 12.9 1.0
CD A:LYS14 4.7 18.2 1.0
C A:LEU231 4.8 13.3 1.0
O A:HOH513 4.8 33.7 1.0
N A:VAL232 4.8 14.7 1.0
O A:HOH432 4.9 27.3 1.0
CB A:LEU231 4.9 14.2 1.0
CG A:LYS14 5.0 17.2 1.0
CA A:VAL232 5.0 16.8 1.0

Chlorine binding site 3 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 3 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:18.2
occ:1.00
O C:HOH519 3.0 33.1 1.0
O C:HOH509 3.1 33.8 1.0
NH1 C:ARG53 3.2 18.6 1.0
N C:ASP90 3.3 15.8 1.0
N C:VAL62 3.3 12.7 1.0
CA C:GLY61 3.7 16.2 1.0
O C:VAL62 3.8 15.8 1.0
CB C:ASP90 3.8 22.3 1.0
CA C:CYS89 3.9 14.4 1.0
C C:GLY61 4.0 17.7 1.0
C C:CYS89 4.1 15.4 1.0
CG C:ASP90 4.1 29.9 1.0
CA C:ASP90 4.1 18.2 1.0
O C:GLY88 4.2 21.4 1.0
OD2 C:ASP90 4.2 31.4 1.0
CA C:VAL62 4.3 13.3 1.0
CD C:ARG53 4.4 19.1 1.0
CD1 C:TRP91 4.4 14.4 1.0
CB C:VAL62 4.4 16.7 1.0
CZ C:ARG53 4.5 16.0 1.0
C C:VAL62 4.5 14.7 1.0
CB C:CYS89 4.6 13.8 1.0
OD1 C:ASP90 4.6 31.5 1.0
N C:TRP91 4.8 16.3 1.0
NE C:ARG53 4.9 17.4 1.0
O C:ILE60 4.9 22.0 1.0
N C:CYS89 4.9 17.9 1.0
C C:ASP90 4.9 17.1 1.0
N C:GLY61 5.0 18.6 1.0
C C:GLY88 5.0 21.1 1.0

Chlorine binding site 4 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 4 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:21.6
occ:0.81
O C:HOH478 3.1 26.0 1.0
NZ C:LYS14 3.1 23.1 1.0
NE2 C:HIS96 3.1 18.1 1.0
ND2 C:ASN12 3.4 18.5 1.0
O C:HOH428 3.5 32.7 1.0
CE C:LYS14 3.6 29.4 1.0
CG C:LEU231 3.7 16.3 1.0
CD1 C:LEU231 3.7 17.4 1.0
CB C:ASN12 3.8 17.2 1.0
CD2 C:HIS96 4.1 18.3 1.0
CG C:ASN12 4.1 15.9 1.0
CE1 C:HIS96 4.1 20.8 1.0
N C:GLY233 4.1 21.2 1.0
C C:VAL232 4.2 23.1 1.0
CD2 C:LEU231 4.2 19.1 1.0
CA C:GLY233 4.3 24.0 1.0
O C:VAL232 4.3 19.6 1.0
O C:LEU231 4.6 15.6 1.0
CD C:LYS14 4.7 23.5 1.0
C C:LEU231 4.7 12.8 1.0
N C:VAL232 4.8 16.2 1.0
CA C:VAL232 4.8 19.6 1.0
CG C:LYS14 4.9 20.4 1.0
CB C:LEU231 5.0 16.1 1.0

Chlorine binding site 5 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 5 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:20.0
occ:0.96
O D:HOH543 3.1 31.2 1.0
NH1 D:ARG53 3.2 16.9 1.0
N D:VAL62 3.3 15.8 1.0
N D:ASP90 3.3 14.4 1.0
CB D:ASP90 3.7 18.8 1.0
CA D:GLY61 3.7 14.9 1.0
CG D:ASP90 3.8 27.1 1.0
O D:VAL62 3.9 15.4 1.0
CA D:CYS89 3.9 18.6 1.0
OD2 D:ASP90 4.0 28.8 1.0
C D:GLY61 4.0 16.9 1.0
C D:CYS89 4.1 17.7 1.0
O D:GLY88 4.1 19.8 1.0
CA D:ASP90 4.1 17.0 1.0
CD D:ARG53 4.2 20.2 1.0
CA D:VAL62 4.3 17.5 1.0
OD1 D:ASP90 4.4 28.1 1.0
CZ D:ARG53 4.4 16.3 1.0
CB D:VAL62 4.4 18.0 1.0
C D:VAL62 4.5 17.4 1.0
CD1 D:TRP91 4.6 18.3 1.0
O D:HOH433 4.7 35.0 1.0
CB D:CYS89 4.7 15.1 1.0
NE D:ARG53 4.8 17.8 1.0
O D:ILE60 4.9 18.3 1.0
N D:CYS89 4.9 21.5 1.0
CG2 D:VAL62 4.9 20.0 1.0
C D:GLY88 5.0 24.0 1.0
N D:GLY61 5.0 17.6 1.0
N D:TRP91 5.0 18.7 1.0
O D:HOH503 5.0 31.6 1.0

Chlorine binding site 6 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 6 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:17.3
occ:0.61
O D:HOH424 2.1 24.7 1.0
ND2 D:ASN195 2.2 16.4 1.0
O D:HOH507 2.2 25.5 1.0
O D:HOH428 2.3 23.4 1.0
CG D:ASN195 3.2 22.2 1.0
OD1 D:ASN195 3.6 23.6 1.0
OD1 D:ASP191 4.1 24.9 1.0
OD2 D:ASP191 4.2 25.0 1.0
CB D:ASN195 4.5 18.6 1.0
CG D:ASP191 4.6 24.6 1.0
CA D:ASN195 4.8 17.6 1.0

Reference:

R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, A.Ochoa-Leyva. Crystal Structure of A Novel Triose Phosphate Isomerase From Shrimp To Be Published.
Page generated: Thu Dec 28 03:36:21 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy