Chlorine in PDB 8uz7: Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome

Protein crystallography data

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7 was solved by R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, J.A.Lopez-Garcia, A.Ochoa-Leyva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.45 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.564, 84.253, 73.739, 90, 92.69, 90
R / Rfree (%) 18.9 / 19.1

Other elements in 8uz7:

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome (pdb code 8uz7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 1 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:16.7
occ:1.00
O A:HOH549 3.1 31.5 1.0
O A:HOH533 3.1 34.1 1.0
NH1 A:ARG53 3.2 13.1 1.0
N A:ASP90 3.3 11.6 1.0
N A:VAL62 3.3 14.9 1.0
CA A:GLY61 3.7 14.8 1.0
CB A:ASP90 3.7 14.0 1.0
O A:VAL62 3.8 15.4 1.0
CG A:ASP90 3.9 29.0 1.0
CA A:CYS89 4.0 17.6 1.0
C A:GLY61 4.0 12.3 1.0
CA A:ASP90 4.1 14.6 1.0
C A:CYS89 4.1 14.8 1.0
OD2 A:ASP90 4.1 30.6 1.0
CD1 A:TRP91 4.2 16.4 1.0
O A:GLY88 4.2 18.5 1.0
CD A:ARG53 4.3 18.7 1.0
CA A:VAL62 4.3 16.1 1.0
CZ A:ARG53 4.4 14.6 1.0
C A:VAL62 4.5 14.4 1.0
OD1 A:ASP90 4.5 25.6 1.0
CB A:VAL62 4.6 15.4 1.0
CB A:CYS89 4.7 15.1 1.0
O A:HOH421 4.7 35.4 1.0
N A:TRP91 4.7 12.1 1.0
NE A:ARG53 4.8 15.1 1.0
C A:ASP90 4.9 14.7 1.0
O A:ILE60 4.9 17.9 1.0
O A:HOH467 4.9 31.3 1.0
N A:GLY61 4.9 17.3 1.0
O A:HOH500 4.9 29.9 1.0

Chlorine binding site 2 out of 6 in 8uz7

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Chlorine binding site 2 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:18.8
occ:0.85
O A:HOH440 3.0 25.7 1.0
NE2 A:HIS96 3.1 16.9 1.0
CE A:LYS14 3.3 22.7 1.0
NZ A:LYS14 3.5 23.3 1.0
ND2 A:ASN12 3.5 15.6 1.0
CG A:LEU231 3.6 15.3 1.0
CD1 A:LEU231 3.7 15.3 1.0
CB A:ASN12 3.8 11.8 1.0
CD2 A:LEU231 4.0 17.9 1.0
CE1 A:HIS96 4.0 15.3 1.0
CD2 A:HIS96 4.1 13.9 1.0
CG A:ASN12 4.2 18.2 1.0
N A:GLY233 4.2 18.2 1.0
C A:VAL232 4.3 18.8 1.0
O A:VAL232 4.3 16.3 1.0
CA A:GLY233 4.3 18.6 1.0
O A:LEU231 4.7 12.9 1.0
CD A:LYS14 4.7 18.2 1.0
C A:LEU231 4.8 13.3 1.0
O A:HOH513 4.8 33.7 1.0
N A:VAL232 4.8 14.7 1.0
O A:HOH432 4.9 27.3 1.0
CB A:LEU231 4.9 14.2 1.0
CG A:LYS14 5.0 17.2 1.0
CA A:VAL232 5.0 16.8 1.0

Chlorine binding site 3 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 3 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:18.2
occ:1.00
O C:HOH519 3.0 33.1 1.0
O C:HOH509 3.1 33.8 1.0
NH1 C:ARG53 3.2 18.6 1.0
N C:ASP90 3.3 15.8 1.0
N C:VAL62 3.3 12.7 1.0
CA C:GLY61 3.7 16.2 1.0
O C:VAL62 3.8 15.8 1.0
CB C:ASP90 3.8 22.3 1.0
CA C:CYS89 3.9 14.4 1.0
C C:GLY61 4.0 17.7 1.0
C C:CYS89 4.1 15.4 1.0
CG C:ASP90 4.1 29.9 1.0
CA C:ASP90 4.1 18.2 1.0
O C:GLY88 4.2 21.4 1.0
OD2 C:ASP90 4.2 31.4 1.0
CA C:VAL62 4.3 13.3 1.0
CD C:ARG53 4.4 19.1 1.0
CD1 C:TRP91 4.4 14.4 1.0
CB C:VAL62 4.4 16.7 1.0
CZ C:ARG53 4.5 16.0 1.0
C C:VAL62 4.5 14.7 1.0
CB C:CYS89 4.6 13.8 1.0
OD1 C:ASP90 4.6 31.5 1.0
N C:TRP91 4.8 16.3 1.0
NE C:ARG53 4.9 17.4 1.0
O C:ILE60 4.9 22.0 1.0
N C:CYS89 4.9 17.9 1.0
C C:ASP90 4.9 17.1 1.0
N C:GLY61 5.0 18.6 1.0
C C:GLY88 5.0 21.1 1.0

Chlorine binding site 4 out of 6 in 8uz7

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Chlorine binding site 4 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:21.6
occ:0.81
O C:HOH478 3.1 26.0 1.0
NZ C:LYS14 3.1 23.1 1.0
NE2 C:HIS96 3.1 18.1 1.0
ND2 C:ASN12 3.4 18.5 1.0
O C:HOH428 3.5 32.7 1.0
CE C:LYS14 3.6 29.4 1.0
CG C:LEU231 3.7 16.3 1.0
CD1 C:LEU231 3.7 17.4 1.0
CB C:ASN12 3.8 17.2 1.0
CD2 C:HIS96 4.1 18.3 1.0
CG C:ASN12 4.1 15.9 1.0
CE1 C:HIS96 4.1 20.8 1.0
N C:GLY233 4.1 21.2 1.0
C C:VAL232 4.2 23.1 1.0
CD2 C:LEU231 4.2 19.1 1.0
CA C:GLY233 4.3 24.0 1.0
O C:VAL232 4.3 19.6 1.0
O C:LEU231 4.6 15.6 1.0
CD C:LYS14 4.7 23.5 1.0
C C:LEU231 4.7 12.8 1.0
N C:VAL232 4.8 16.2 1.0
CA C:VAL232 4.8 19.6 1.0
CG C:LYS14 4.9 20.4 1.0
CB C:LEU231 5.0 16.1 1.0

Chlorine binding site 5 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 5 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:20.0
occ:0.96
O D:HOH543 3.1 31.2 1.0
NH1 D:ARG53 3.2 16.9 1.0
N D:VAL62 3.3 15.8 1.0
N D:ASP90 3.3 14.4 1.0
CB D:ASP90 3.7 18.8 1.0
CA D:GLY61 3.7 14.9 1.0
CG D:ASP90 3.8 27.1 1.0
O D:VAL62 3.9 15.4 1.0
CA D:CYS89 3.9 18.6 1.0
OD2 D:ASP90 4.0 28.8 1.0
C D:GLY61 4.0 16.9 1.0
C D:CYS89 4.1 17.7 1.0
O D:GLY88 4.1 19.8 1.0
CA D:ASP90 4.1 17.0 1.0
CD D:ARG53 4.2 20.2 1.0
CA D:VAL62 4.3 17.5 1.0
OD1 D:ASP90 4.4 28.1 1.0
CZ D:ARG53 4.4 16.3 1.0
CB D:VAL62 4.4 18.0 1.0
C D:VAL62 4.5 17.4 1.0
CD1 D:TRP91 4.6 18.3 1.0
O D:HOH433 4.7 35.0 1.0
CB D:CYS89 4.7 15.1 1.0
NE D:ARG53 4.8 17.8 1.0
O D:ILE60 4.9 18.3 1.0
N D:CYS89 4.9 21.5 1.0
CG2 D:VAL62 4.9 20.0 1.0
C D:GLY88 5.0 24.0 1.0
N D:GLY61 5.0 17.6 1.0
N D:TRP91 5.0 18.7 1.0
O D:HOH503 5.0 31.6 1.0

Chlorine binding site 6 out of 6 in 8uz7

Go back to Chlorine Binding Sites List in 8uz7
Chlorine binding site 6 out of 6 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:17.3
occ:0.61
O D:HOH424 2.1 24.7 1.0
ND2 D:ASN195 2.2 16.4 1.0
O D:HOH507 2.2 25.5 1.0
O D:HOH428 2.3 23.4 1.0
CG D:ASN195 3.2 22.2 1.0
OD1 D:ASN195 3.6 23.6 1.0
OD1 D:ASP191 4.1 24.9 1.0
OD2 D:ASP191 4.2 25.0 1.0
CB D:ASN195 4.5 18.6 1.0
CG D:ASP191 4.6 24.6 1.0
CA D:ASN195 4.8 17.6 1.0

Reference:

R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, A.Ochoa-Leyva. Crystal Structure of A Novel Triose Phosphate Isomerase From Shrimp To Be Published.
Page generated: Tue Jul 30 13:28:29 2024

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