Chlorine in PDB 8v5f: Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae

The structure of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae, PDB code: 8v5f was solved by D.M.Wood, R.C.J.Dobson, C.R.Horne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.91 / 2.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.241, 109.226, 202.385, 90, 90, 90
R / Rfree (%)	26.2 / 31.3

The binding sites of Chlorine atom in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae (pdb code 8v5f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae, PDB code: 8v5f:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:67.2 occ:1.00 HG12 A:ILE233 2.5 68.7 1.0 H A:GLN226 2.6 84.5 1.0 HG A:SER97 2.7 81.4 1.0 H A:ILE233 2.7 84.9 1.0 HB2 A:GLN226 2.8 65.6 1.0 HB3 A:SER97 2.9 60.1 1.0 HA A:ARG232 2.9 83.5 1.0 HB3 A:HIS224 3.0 83.6 1.0 OG A:SER97 3.1 67.5 1.0 HD1 A:HIS224 3.1 54.2 1.0 H A:SER225 3.2 77.5 1.0 N A:ILE233 3.4 70.4 1.0 CG1 A:ILE233 3.5 56.9 1.0 CB A:SER97 3.5 49.7 1.0 N A:GLN226 3.5 70.0 1.0 HG2 A:ARG232 3.5 88.0 1.0 HG21 A:ILE233 3.6 74.8 1.0 CB A:GLN226 3.6 54.3 1.0 OG A:SER225 3.7 74.8 1.0 CA A:ARG232 3.7 69.2 1.0 N A:SER225 3.7 64.2 1.0 HG A:SER225 3.7 90.1 1.0 HB3 A:ARG232 3.8 59.9 1.0 HG13 A:ILE233 3.8 68.7 1.0 HB3 A:GLN226 3.8 65.6 1.0 ND1 A:HIS224 3.9 54.2 1.0 CB A:HIS224 3.9 69.3 1.0 C A:ARG232 4.0 70.3 1.0 CB A:ARG232 4.1 49.5 1.0 HA A:HIS224 4.1 75.5 1.0 HB2 A:SER97 4.2 60.1 1.0 CA A:GLN226 4.2 62.1 1.0 HA A:SER97 4.2 70.9 1.0 HD11 A:ILE233 4.2 77.4 1.0 CG A:ARG232 4.2 73.0 1.0 CB A:ILE233 4.3 70.6 1.0 CD1 A:ILE233 4.3 64.2 1.0 HD12 A:ILE233 4.3 77.4 1.0 CG2 A:ILE233 4.3 62.0 1.0 C A:HIS224 4.3 52.9 1.0 CG A:HIS224 4.3 57.9 1.0 CA A:HIS224 4.4 62.6 1.0 CA A:ILE233 4.4 62.2 1.0 C A:SER225 4.4 75.4 1.0 CA A:SER225 4.4 65.0 1.0 CA A:SER97 4.4 58.8 1.0 OE1 A:GLN226 4.5 83.0 1.0 HB2 A:HIS224 4.6 83.6 1.0 CB A:SER225 4.6 81.8 1.0 HD3 A:ARG232 4.6 60.0 1.0 HG22 A:ILE233 4.6 74.8 1.0 CG A:GLN226 4.7 75.6 1.0 O A:GLN231 4.8 59.5 1.0 HA A:GLN226 4.9 75.0 1.0 HG2 A:GLN226 4.9 91.1 1.0 N A:ARG232 4.9 57.3 1.0 CD A:GLN226 4.9 78.2 1.0 HB2 A:SER225 4.9 98.6 1.0 HG3 A:ARG232 5.0 88.0 1.0 O A:SER97 5.0 45.9 1.0

Chlorine binding site 2 out of 4 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl305 b:74.6 occ:1.00 H B:GLN226 2.3 101.2 1.0 HG B:SER225 2.5 98.0 1.0 H B:SER225 2.8 73.3 1.0 HG2 B:GLN226 2.8 71.5 1.0 HG12 B:ILE233 2.9 83.6 1.0 HB2 B:GLN226 2.9 79.1 1.0 HB3 B:HIS224 2.9 90.8 1.0 HB2 B:SER97 3.0 71.5 1.0 HA B:ARG232 3.0 69.0 1.0 N B:GLN226 3.1 84.0 1.0 OG B:SER225 3.1 81.3 1.0 H B:ILE233 3.1 82.3 1.0 HG3 B:GLN226 3.3 71.5 1.0 CG B:GLN226 3.4 59.2 1.0 HB3 B:SER97 3.4 71.5 1.0 N B:SER225 3.4 60.8 1.0 CB B:GLN226 3.5 65.5 1.0 HB3 B:ARG232 3.6 68.6 1.0 CB B:SER97 3.6 59.2 1.0 ND1 B:HIS224 3.7 60.6 1.0 HG2 B:ARG232 3.7 71.8 1.0 CG1 B:ILE233 3.8 69.3 1.0 CB B:HIS224 3.8 75.3 1.0 CA B:ARG232 3.8 57.1 1.0 N B:ILE233 3.9 68.3 1.0 CA B:GLN226 3.9 65.7 1.0 HG13 B:ILE233 4.0 83.6 1.0 CA B:SER225 4.0 65.6 1.0 C B:SER225 4.0 77.5 1.0 CB B:ARG232 4.0 56.8 1.0 HA B:HIS224 4.1 83.5 1.0 CB B:SER225 4.1 50.5 1.0 C B:HIS224 4.2 65.5 1.0 CG B:HIS224 4.2 64.9 1.0 HD3 B:ARG232 4.3 81.9 1.0 HG23 B:ILE233 4.3 74.6 1.0 CA B:HIS224 4.3 69.2 1.0 CG B:ARG232 4.3 59.5 1.0 C B:ARG232 4.3 56.0 1.0 HB3 B:GLN226 4.4 79.1 1.0 HD11 B:ILE233 4.4 67.8 1.0 HA B:SER97 4.4 77.3 1.0 HB2 B:HIS224 4.5 90.8 1.0 CD1 B:ILE233 4.5 56.2 1.0 HB3 B:SER225 4.5 61.0 1.0 HD13 B:ILE233 4.5 67.8 1.0 HA B:GLN226 4.6 79.2 1.0 OG B:SER97 4.6 67.1 1.0 CA B:SER97 4.6 64.0 1.0 CB B:ILE233 4.8 62.2 1.0 CD B:GLN226 4.8 75.6 1.0 CD B:ARG232 4.8 67.9 1.0 O B:GLN226 4.8 68.2 1.0 CE1 B:HIS224 4.8 52.6 1.0 HB2 B:SER225 4.9 61.0 1.0 O B:GLN231 4.9 65.0 1.0 CA B:ILE233 4.9 71.4 1.0 C B:GLN226 4.9 71.6 1.0 CG2 B:ILE233 4.9 61.8 1.0 HA B:SER225 5.0 79.1 1.0 N B:ARG232 5.0 56.5 1.0 HB2 B:ARG232 5.0 68.6 1.0 HG B:SER97 5.0 80.9 1.0

Chlorine binding site 3 out of 4 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:61.1 occ:1.00 H C:GLN226 2.2 85.9 1.0 H C:ILE233 2.7 58.8 1.0 HB2 C:GLN226 2.8 90.3 1.0 HB3 C:HIS224 2.9 63.0 1.0 HG12 C:ILE233 2.9 77.5 1.0 HA C:ARG232 3.0 73.1 1.0 HG C:SER97 3.0 85.2 1.0 HD1 C:HIS224 3.0 78.7 1.0 H C:SER225 3.0 70.6 1.0 N C:GLN226 3.1 71.2 1.0 HG2 C:GLN226 3.1 90.0 1.0 HB3 C:SER97 3.2 77.5 1.0 OG C:SER97 3.3 70.6 1.0 N C:SER225 3.4 58.5 1.0 CB C:GLN226 3.5 74.9 1.0 N C:ILE233 3.5 48.6 1.0 CG C:GLN226 3.6 74.7 1.0 HG23 C:ILE233 3.6 73.5 1.0 HB3 C:ARG232 3.6 74.7 1.0 HG3 C:GLN226 3.7 90.0 1.0 CG1 C:ILE233 3.7 64.3 1.0 HG13 C:ILE233 3.7 77.5 1.0 HG C:SER225 3.7 97.9 1.0 ND1 C:HIS224 3.7 65.2 1.0 HB2 C:SER225 3.7 79.8 1.0 CB C:HIS224 3.7 52.2 1.0 CA C:ARG232 3.8 60.6 1.0 CB C:SER97 3.8 64.2 1.0 CA C:GLN226 3.9 75.5 1.0 HA C:HIS224 4.0 81.5 1.0 HG2 C:ARG232 4.0 81.5 1.0 C C:SER225 4.0 76.4 1.0 C C:HIS224 4.1 62.1 1.0 CA C:SER225 4.1 72.2 1.0 CB C:ARG232 4.1 61.9 1.0 CG C:HIS224 4.2 57.0 1.0 HD3 C:ARG232 4.2 73.5 1.0 CA C:HIS224 4.2 67.6 1.0 C C:ARG232 4.2 52.5 1.0 CB C:SER225 4.2 66.1 1.0 HB3 C:GLN226 4.3 90.3 1.0 OG C:SER225 4.4 81.2 1.0 CG2 C:ILE233 4.4 60.9 1.0 HB2 C:SER97 4.4 77.5 1.0 CB C:ILE233 4.4 73.1 1.0 HB2 C:HIS224 4.4 63.0 1.0 CG C:ARG232 4.5 67.6 1.0 CA C:ILE233 4.6 63.7 1.0 HA C:GLN226 4.6 91.0 1.0 O C:GLN226 4.6 84.3 1.0 HA C:SER97 4.7 76.0 1.0 HG21 C:ILE233 4.7 73.5 1.0 HD11 C:ILE233 4.7 67.0 1.0 C C:GLN226 4.8 74.0 1.0 CD1 C:ILE233 4.8 55.5 1.0 CA C:SER97 4.8 63.0 1.0 CD C:ARG232 4.9 60.9 1.0 CE1 C:HIS224 4.9 58.2 1.0 O C:GLN231 4.9 64.6 1.0 N C:ARG232 4.9 71.8 1.0 HE3 C:MET101 5.0 70.6 1.0 O C:HIS224 5.0 56.5 1.0

Chlorine binding site 4 out of 4 in the Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Nan Regulatory Protein Full-Length From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl303 b:58.2 occ:1.00 H D:ILE233 2.3 68.0 1.0 HG12 D:ILE233 2.5 73.7 1.0 H D:GLN226 2.6 82.6 1.0 HA D:ARG232 2.7 66.0 1.0 HG D:SER97 2.8 69.2 1.0 HD2 D:HIS224 2.8 74.0 1.0 HB3 D:SER97 3.0 53.0 1.0 HB2 D:GLN226 3.0 60.2 1.0 HG2 D:GLN226 3.1 62.8 1.0 HB3 D:HIS224 3.1 70.6 1.0 H D:SER225 3.1 64.0 1.0 N D:ILE233 3.1 56.3 1.0 OG D:SER97 3.2 57.3 1.0 CG1 D:ILE233 3.3 61.0 1.0 N D:GLN226 3.4 68.5 1.0 HG13 D:ILE233 3.5 73.7 1.0 CA D:ARG232 3.5 54.6 1.0 CB D:SER97 3.5 43.8 1.0 N D:SER225 3.6 52.9 1.0 HG3 D:GLN226 3.6 62.8 1.0 CG D:GLN226 3.6 52.0 1.0 HB3 D:ARG232 3.6 67.5 1.0 HG23 D:ILE233 3.6 75.7 1.0 CD2 D:HIS224 3.6 61.3 1.0 HB2 D:SER225 3.6 64.6 1.0 CB D:GLN226 3.7 49.8 1.0 HG2 D:ARG232 3.7 77.1 1.0 C D:ARG232 3.8 56.6 1.0 CB D:HIS224 3.9 58.5 1.0 CB D:ARG232 3.9 55.9 1.0 CB D:ILE233 4.1 67.7 1.0 CG D:ARG232 4.1 63.9 1.0 HA D:HIS224 4.1 62.5 1.0 CG D:HIS224 4.1 63.9 1.0 HG3 D:ARG232 4.1 77.1 1.0 HB2 D:SER97 4.1 53.0 1.0 CA D:ILE233 4.2 58.3 1.0 CA D:GLN226 4.2 52.8 1.0 CA D:SER225 4.2 60.4 1.0 C D:HIS224 4.2 55.2 1.0 CB D:SER225 4.3 53.5 1.0 CG2 D:ILE233 4.3 62.7 1.0 C D:SER225 4.3 41.5 1.0 CA D:HIS224 4.3 51.7 1.0 HD12 D:ILE233 4.4 66.1 1.0 CD1 D:ILE233 4.4 54.8 1.0 OG D:SER225 4.5 88.1 1.0 HB3 D:GLN226 4.5 60.2 1.0 HA D:SER97 4.6 61.8 1.0 HG21 D:ILE233 4.6 75.7 1.0 HA D:ILE233 4.6 70.4 1.0 HD11 D:ILE233 4.6 66.1 1.0 HB2 D:HIS224 4.7 70.6 1.0 N D:ARG232 4.7 48.3 1.0 CA D:SER97 4.7 51.2 1.0 H D:SER234 4.8 46.1 1.0 O D:GLN231 4.8 55.1 1.0 HG D:SER225 4.8 106.2 1.0 HA D:GLN226 4.8 63.8 1.0 HE3 D:MET101 4.8 84.4 1.0 HB2 D:ARG232 4.8 67.5 1.0 NE2 D:HIS224 4.9 43.4 1.0 HB D:ILE233 5.0 81.6 1.0 O D:ARG232 5.0 42.1 1.0

D.M.Wood, R.C.J.Dobson, C.R.Horne. Structure of Full-Length Nan-Regulatory Protein (Nanr) From Streptococcus Pneumoniae To Be Published.