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Chlorine in PDB 8vtk: Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine

Protein crystallography data

The structure of Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine, PDB code: 8vtk was solved by K.Tran, I.Mathews, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.76 / 3.07
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 140.95, 140.95, 186.72, 90, 90, 120
R / Rfree (%) 17.7 / 21.3

Other elements in 8vtk:

The structure of Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine also contains other interesting chemical elements:

Iron (Fe) 1 atom
Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine (pdb code 8vtk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine, PDB code: 8vtk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8vtk

Go back to Chlorine Binding Sites List in 8vtk
Chlorine binding site 1 out of 2 in the Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl210

b:53.5
occ:1.00
CL M:2L5210 0.0 53.5 1.0
C15 M:2L5210 1.7 52.5 1.0
C19 M:2L5210 2.7 50.0 1.0
C14 M:2L5210 2.7 47.0 1.0
C13 M:2L5210 3.1 44.4 1.0
O2A L:BCL303 3.3 57.8 1.0
CBB L:BPH304 3.5 46.4 1.0
CGA L:BCL303 3.6 49.6 1.0
CBA L:BCL303 3.7 46.6 1.0
OBB L:BPH304 3.7 53.4 1.0
CAB L:BPH304 3.9 56.3 1.0
C18 M:2L5210 4.0 51.2 1.0
C16 M:2L5210 4.0 48.1 1.0
O M:ILE206 4.0 46.8 1.0
C1 L:BCL303 4.1 50.4 1.0
CG2 M:ILE206 4.1 46.4 1.0
C4D L:BCL303 4.1 46.4 1.0
CHA L:BCL303 4.1 51.0 1.0
ND L:BCL303 4.2 43.8 1.0
O1A L:BCL303 4.2 53.8 1.0
C1A L:BCL303 4.4 51.4 1.0
C17 M:2L5210 4.5 47.0 1.0
NA L:BCL303 4.5 48.9 1.0
CAA L:BCL303 4.5 46.0 1.0
CA M:ALA207 4.5 48.5 1.0
CA M:2L5210 4.5 49.5 1.0
C M:ILE206 4.6 50.9 1.0
C3D L:BCL303 4.8 46.3 1.0
N M:ALA207 4.8 53.7 1.0
C1D L:BCL303 4.8 49.8 1.0
N M:2L5210 4.9 50.3 1.0
CBD L:BCL303 4.9 48.0 1.0
MG L:BCL303 4.9 46.0 1.0
O M:ALA207 5.0 48.0 1.0

Chlorine binding site 2 out of 2 in 8vtk

Go back to Chlorine Binding Sites List in 8vtk
Chlorine binding site 2 out of 2 in the Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl307

b:109.8
occ:1.00
O L:HOH404 2.6 71.8 1.0
C11 L:U10305 3.0 117.9 1.0
C9 L:U10305 3.2 132.4 1.0
C10 L:U10305 3.2 121.6 1.0
C8 L:U10305 4.2 136.7 1.0
CE1 L:PHE179 4.7 52.5 1.0
CZ L:PHE179 4.8 42.6 1.0

Reference:

K.Tran, I.Mathews, S.G.Boxer. Crystal Structure of R.Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Chlorophenylalanine To Be Published.
Page generated: Tue Jul 30 13:42:31 2024

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