Chlorine in PDB 8w0d: Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor

Protein crystallography data

The structure of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor, PDB code: 8w0d was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.61 / 2.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 139.487, 139.487, 544.117, 90, 90, 120
R / Rfree (%) 18.4 / 22.6

Other elements in 8w0d:

The structure of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor (pdb code 8w0d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor, PDB code: 8w0d:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 1 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl706

b:81.3
occ:1.00
OG C:SER90 3.7 56.8 1.0
N C:GLY91 4.1 50.8 1.0
O A:ALA117 4.5 56.1 1.0
CB A:PRO121 4.5 57.7 1.0
O C:HOH809 4.5 56.8 1.0
CA C:GLY91 4.5 57.6 1.0
OD2 C:ASP97 4.7 65.2 1.0
CD2 A:LEU145 4.7 47.0 1.0
CB C:SER90 4.8 53.9 1.0
CD1 A:PHE118 4.9 55.4 1.0
C A:ALA117 5.0 52.7 1.0
CB A:ALA117 5.0 52.3 1.0

Chlorine binding site 2 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 2 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:75.9
occ:1.00
N A:GLY91 3.8 42.3 1.0
CB B:PRO121 4.0 46.1 1.0
O A:HOH877 4.1 40.4 1.0
OG A:SER90 4.2 58.2 1.0
CA A:GLY91 4.2 38.6 1.0
O B:ALA117 4.4 49.7 1.0
CG B:PRO121 4.5 47.2 1.0
OD2 A:ASP97 4.9 45.6 1.0
C A:GLY91 4.9 36.5 1.0
C A:SER90 5.0 43.1 1.0
C B:ALA117 5.0 46.1 1.0
O A:HOH844 5.0 44.0 1.0

Chlorine binding site 3 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 3 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:90.6
occ:1.00
NH1 B:ARG618 3.8 86.5 1.0
NH2 B:ARG618 3.9 78.7 1.0
CZ B:ARG618 4.3 76.3 1.0
CG1 B:VAL614 4.8 70.2 1.0

Chlorine binding site 4 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 4 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl703

b:84.9
occ:1.00
O C:HOH821 3.2 58.8 1.0
OG B:SER90 3.7 62.5 1.0
N B:GLY91 4.3 51.5 1.0
O C:ALA117 4.5 64.0 1.0
CD1 C:PHE118 4.6 64.2 1.0
CA B:GLY91 4.7 58.7 1.0
CB C:PRO121 4.7 59.3 1.0
CE1 C:PHE118 4.8 65.0 1.0
OD2 B:ASP97 4.9 75.6 1.0
CD2 C:LEU145 4.9 58.5 1.0
CB B:SER90 4.9 57.4 1.0
C C:ALA117 5.0 64.1 1.0

Chlorine binding site 5 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 5 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:82.9
occ:1.00
OG C:SER201 3.3 85.3 1.0
NH1 C:ARG205 3.6 81.7 1.0
NH2 C:ARG205 3.9 76.1 1.0
CG C:PRO301 4.0 87.6 1.0
CB C:SER201 4.2 79.3 1.0
CZ C:ARG205 4.3 79.9 1.0
CE1 C:PHE197 4.4 71.0 1.0
CA C:SER201 4.8 75.9 1.0
CD1 C:PHE197 4.8 77.7 1.0
CD C:PRO301 4.8 99.4 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor To Be Published.
Page generated: Tue Jul 30 13:45:30 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy