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Chlorine in PDB 8wdi: Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography

Enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography

All present enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography, PDB code: 8wdi was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.99 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.83, 78.83, 38.2, 90, 90, 90
R / Rfree (%) 25.1 / 29.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography (pdb code 8wdi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography, PDB code: 8wdi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8wdi

Go back to Chlorine Binding Sites List in 8wdi
Chlorine binding site 1 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:8.7
occ:0.00
ND2 A:ASN131 3.3 9.9 1.0
CB A:ASN131 3.6 8.7 1.0
CG A:ASN131 3.9 8.0 1.0
CG1 A:VAL127 4.0 13.5 1.0
CA A:ALA128 4.0 10.3 1.0
O A:VAL127 4.1 10.1 1.0
C A:VAL127 4.3 11.9 1.0
N A:ALA128 4.3 9.7 1.0
CD A:ARG132 4.4 8.4 1.0
CG A:ARG132 4.5 8.1 1.0
CB A:ALA128 4.5 6.0 1.0
O A:HOH315 4.7 7.5 1.0
CB A:VAL127 4.7 11.9 1.0
CA A:ASN131 4.9 11.6 1.0

Chlorine binding site 2 out of 2 in 8wdi

Go back to Chlorine Binding Sites List in 8wdi
Chlorine binding site 2 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme By Fixed-Target Pink-Beam Serial Synchrotron Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:11.8
occ:0.00
N A:GLY44 3.1 7.9 1.0
OG A:SER42 3.1 6.8 1.0
CA A:GLY44 3.5 11.9 1.0
CB A:SER42 3.5 7.7 1.0
CD1 A:ILE142 3.5 17.0 1.0
CA A:GLN139 3.6 17.7 1.0
CB A:GLN139 3.8 22.6 1.0
N A:LEU43 4.0 7.6 1.0
CG A:GLN139 4.0 21.9 1.0
N A:GLN139 4.1 12.3 1.0
CG1 A:ILE142 4.1 14.7 1.0
C A:SER42 4.3 11.6 1.0
C A:LEU43 4.3 9.7 1.0
CG2 A:VAL138 4.5 10.0 1.0
C A:VAL138 4.5 15.7 1.0
O A:VAL138 4.5 10.1 1.0
CA A:SER42 4.5 11.6 1.0
CA A:LEU43 4.6 10.8 1.0
C A:GLY44 4.7 8.1 1.0
O A:SER42 4.8 7.5 1.0
C A:GLN139 4.8 11.5 1.0
N A:ASN45 4.9 7.7 1.0
CG2 A:ILE142 4.9 8.3 1.0
O A:GLN139 5.0 13.4 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Thu Dec 28 03:37:47 2023

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