Chlorine in PDB 8wpv: Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN

The structure of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN, PDB code: 8wpv was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.93 / 2.06
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.599, 180.599, 180.599, 90, 90, 90
R / Rfree (%)	21.7 / 24.9

The structure of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iron	(Fe)	10 atoms

The binding sites of Chlorine atom in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN (pdb code 8wpv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN, PDB code: 8wpv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl212 b:55.3 occ:1.00 O A:HOH319 3.0 46.6 1.0 N A:ALA87 3.2 32.7 1.0 FE A:FE210 3.7 112.6 1.0 CA A:VAL86 3.7 33.8 1.0 O A:ALA87 3.7 44.0 1.0 C A:VAL86 3.9 34.2 1.0 CA A:ALA87 4.2 37.0 1.0 O A:SER85 4.2 41.8 1.0 CB A:ALA87 4.3 39.6 1.0 C A:ALA87 4.4 39.4 1.0 CG2 A:VAL86 4.4 39.3 1.0 N A:VAL86 4.5 33.2 1.0 C A:SER85 4.6 35.7 1.0 CB A:VAL86 4.6 38.1 1.0 O A:HOH340 4.8 48.3 1.0

Chlorine binding site 2 out of 2 in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl213 b:54.1 occ:1.00 N A:TYR126 3.2 35.6 1.0 N A:GLU127 3.4 34.6 1.0 CG A:GLU127 3.7 51.0 1.0 CB A:TYR126 3.8 39.7 1.0 CA A:TYR126 3.8 41.6 1.0 C A:TYR126 4.0 39.3 1.0 C A:ASP125 4.1 44.1 1.0 O A:ASP124 4.2 45.0 1.0 CD2 A:TYR126 4.2 44.7 1.0 CB A:GLU127 4.2 41.2 1.0 CD A:GLU127 4.3 55.7 1.0 CA A:ASP125 4.4 38.8 1.0 CA A:GLU127 4.4 38.3 1.0 OD1 A:ASP125 4.4 39.4 1.0 CG A:TYR126 4.5 44.8 1.0 OE1 A:GLU127 4.8 60.4 1.0 OE2 A:GLU127 4.8 45.5 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830