Chlorine in PDB 8x33: Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Protein crystallography data
The structure of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar, PDB code: 8x33
was solved by
X.Liu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.12 /
3.20
|
Space group
|
P 61
|
Cell size a, b, c (Å), α, β, γ (°)
|
96.236,
96.236,
148.889,
90,
90,
120
|
R / Rfree (%)
|
18.6 /
23.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
(pdb code 8x33). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar, PDB code: 8x33:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 8x33
Go back to
Chlorine Binding Sites List in 8x33
Chlorine binding site 1 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:74.5
occ:1.00
|
CE
|
A:LYS297
|
3.2
|
62.0
|
1.0
|
NH2
|
A:ARG325
|
3.4
|
70.6
|
1.0
|
NH1
|
A:ARG325
|
3.5
|
68.0
|
1.0
|
NZ
|
A:LYS297
|
3.6
|
68.5
|
1.0
|
CZ
|
A:ARG325
|
3.9
|
69.3
|
1.0
|
CD
|
A:LYS297
|
4.6
|
51.7
|
1.0
|
CG
|
A:LYS297
|
5.0
|
50.3
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 8x33
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Chlorine Binding Sites List in 8x33
Chlorine binding site 2 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:67.8
occ:1.00
|
NH1
|
A:ARG213
|
2.7
|
55.4
|
1.0
|
NZ
|
A:LYS217
|
3.3
|
55.4
|
1.0
|
CZ
|
A:ARG213
|
4.0
|
57.5
|
1.0
|
OH
|
A:TYR178
|
4.1
|
52.5
|
1.0
|
CE
|
A:LYS217
|
4.6
|
56.4
|
1.0
|
NH2
|
A:ARG213
|
4.6
|
57.8
|
1.0
|
CE1
|
A:TYR178
|
4.8
|
53.3
|
1.0
|
CZ
|
A:TYR178
|
4.9
|
54.3
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 8x33
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Chlorine Binding Sites List in 8x33
Chlorine binding site 3 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:54.3
occ:1.00
|
NH2
|
A:ARG273
|
2.8
|
62.9
|
1.0
|
ND1
|
A:HIS267
|
3.5
|
78.5
|
1.0
|
N
|
A:HIS269
|
3.5
|
76.9
|
1.0
|
CB
|
A:HIS269
|
3.5
|
86.8
|
1.0
|
ND1
|
A:HIS269
|
3.6
|
100.3
|
1.0
|
N
|
A:ASP268
|
3.6
|
75.8
|
1.0
|
CZ
|
A:ARG273
|
3.7
|
71.2
|
1.0
|
NH1
|
A:ARG273
|
3.7
|
84.1
|
1.0
|
CG
|
A:HIS269
|
4.0
|
96.7
|
1.0
|
CA
|
A:HIS269
|
4.0
|
77.1
|
1.0
|
CB
|
A:HIS267
|
4.1
|
73.3
|
1.0
|
CG
|
A:HIS267
|
4.2
|
69.7
|
1.0
|
CA
|
A:HIS267
|
4.3
|
72.0
|
1.0
|
C
|
A:HIS267
|
4.3
|
71.7
|
1.0
|
C
|
A:ASP268
|
4.4
|
82.7
|
1.0
|
CA
|
A:ASP268
|
4.4
|
81.6
|
1.0
|
OD2
|
A:ASP268
|
4.5
|
93.0
|
1.0
|
CE1
|
A:HIS267
|
4.5
|
73.5
|
1.0
|
C
|
A:HIS269
|
4.5
|
71.9
|
1.0
|
N
|
A:TRP270
|
4.6
|
72.4
|
1.0
|
CB
|
A:ASP268
|
4.7
|
86.5
|
1.0
|
CE1
|
A:HIS269
|
4.7
|
98.0
|
1.0
|
NE
|
A:ARG273
|
4.9
|
64.8
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 8x33
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Chlorine Binding Sites List in 8x33
Chlorine binding site 4 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:70.0
occ:1.00
|
NZ
|
B:LYS217
|
3.2
|
61.7
|
1.0
|
NH1
|
B:ARG213
|
3.2
|
53.0
|
1.0
|
OH
|
B:TYR178
|
3.5
|
50.2
|
1.0
|
CZ
|
B:ARG213
|
4.5
|
63.1
|
1.0
|
CZ
|
B:TYR178
|
4.5
|
47.9
|
1.0
|
CE
|
B:LYS217
|
4.6
|
64.2
|
1.0
|
CE1
|
B:TYR178
|
4.7
|
49.5
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 8x33
Go back to
Chlorine Binding Sites List in 8x33
Chlorine binding site 5 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl402
b:58.8
occ:1.00
|
CE
|
B:LYS297
|
3.3
|
52.9
|
1.0
|
NH2
|
B:ARG325
|
3.6
|
52.8
|
1.0
|
NH1
|
B:ARG325
|
3.7
|
59.6
|
1.0
|
NZ
|
B:LYS297
|
3.7
|
56.4
|
1.0
|
CZ
|
B:ARG325
|
4.1
|
57.9
|
1.0
|
CD
|
B:LYS297
|
4.6
|
48.0
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 8x33
Go back to
Chlorine Binding Sites List in 8x33
Chlorine binding site 6 out
of 6 in the Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Cobh-Like Domain in Cobalt Regulator Coar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl403
b:36.3
occ:1.00
|
NH2
|
B:ARG273
|
2.5
|
65.3
|
1.0
|
ND1
|
B:HIS267
|
3.1
|
68.0
|
1.0
|
CZ
|
B:ARG273
|
3.6
|
67.3
|
1.0
|
N
|
B:ASP268
|
3.6
|
76.1
|
1.0
|
N
|
B:HIS269
|
3.7
|
64.2
|
1.0
|
OD2
|
B:ASP268
|
3.9
|
89.0
|
1.0
|
NH1
|
B:ARG273
|
3.9
|
67.1
|
1.0
|
CG
|
B:HIS267
|
4.0
|
58.9
|
1.0
|
CB
|
B:HIS267
|
4.0
|
64.1
|
1.0
|
CE1
|
B:HIS267
|
4.1
|
65.7
|
1.0
|
ND1
|
B:HIS269
|
4.2
|
81.0
|
1.0
|
CA
|
B:HIS267
|
4.2
|
66.5
|
1.0
|
C
|
B:HIS267
|
4.3
|
70.9
|
1.0
|
CB
|
B:HIS269
|
4.3
|
69.2
|
1.0
|
CA
|
B:ASP268
|
4.5
|
74.4
|
1.0
|
CA
|
B:HIS269
|
4.5
|
62.8
|
1.0
|
CB
|
B:ASP268
|
4.6
|
81.0
|
1.0
|
CG
|
B:HIS269
|
4.6
|
75.3
|
1.0
|
C
|
B:ASP268
|
4.6
|
70.3
|
1.0
|
CG
|
B:ASP268
|
4.6
|
89.0
|
1.0
|
NE
|
B:ARG273
|
4.7
|
57.1
|
1.0
|
N
|
B:TRP270
|
4.7
|
63.2
|
1.0
|
C
|
B:HIS269
|
4.8
|
61.8
|
1.0
|
|
Reference:
L.Xichun,
X.Liu.
N/A N/A.
Page generated: Wed Nov 27 17:08:55 2024
|