Chlorine in PDB 8x44: Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi)

Enzymatic activity of Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi)

All present enzymatic activity of Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi):
2.1.1.182;

Protein crystallography data

The structure of Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi), PDB code: 8x44 was solved by S.Saha, S.P.Kanaujia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	66.76 / 2.60
*Space group*	P 2 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	79.78, 85.34, 106.81, 90, 90, 90
*R / R_free (%)*	20.5 / 27.3

Other elements in 8x44:

The structure of Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi) also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi) (pdb code 8x44). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi), PDB code: 8x44:

Chlorine binding site 1 out of 1 in 8x44

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Chlorine Binding Sites List in 8x44

Chlorine binding site 1 out of 1 in the Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi)

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of DIMT1 in Complex with 5'-Methylthioadenosine From Pyrococcus Horikoshii (Formi) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl304 b:63.9 occ:1.00	OE1	B:GLU222	3.2	100.0	1.0
	NH1	B:ARG176	3.3	44.9	1.0
	CD	B:GLU222	3.3	82.9	1.0
	OE2	B:GLU222	3.3	97.8	1.0
	CD1	B:PHE143	4.0	22.8	1.0
	CB	B:PHE143	4.0	22.3	1.0
	CG	B:PHE143	4.1	22.2	1.0
	CG	B:GLU222	4.2	70.3	1.0
	CZ	B:ARG176	4.2	40.9	1.0
	CD	B:LYS147	4.2	43.3	1.0
	NH2	B:ARG176	4.2	39.5	1.0
	CB	B:GLU222	4.5	55.0	1.0
	O3	B:GOL307	4.6	75.3	1.0
	O	B:HOH443	4.7	39.7	1.0
	CE1	B:PHE143	4.8	22.3	1.0
	CE	B:MET180	4.9	26.1	1.0
	O	B:PHE143	4.9	25.3	1.0
	CA	B:PHE143	5.0	22.7	1.0
	CG	B:LYS147	5.0	40.2	1.0

Reference:

S.Saha, S.P.Kanaujia. Structural and Functional Characterization of Archaeal DIMT1 Unveils Distinct Protein Dynamics Essential For Efficient Catalysis. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 39146930
DOI: 10.1016/J.STR.2024.07.013

Page generated: Sat Sep 28 19:41:25 2024

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