Chlorine in PDB 8x7e: Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151

Protein crystallography data

The structure of Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151, PDB code: 8x7e was solved by S.Akai, A.Nomura, K.Yamaguchi, T.Adachi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.34 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 90.45, 79.2, 97.24, 90, 115.67, 90
R / Rfree (%) 21.9 / 26.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151 (pdb code 8x7e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151, PDB code: 8x7e:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8x7e

Go back to Chlorine Binding Sites List in 8x7e
Chlorine binding site 1 out of 4 in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl9000

b:30.6
occ:1.00
CL1 A:YAL9000 0.0 30.6 1.0
C11 A:YAL9000 1.7 26.0 1.0
C10 A:YAL9000 2.7 24.5 1.0
C6 A:YAL9000 2.7 26.0 1.0
N2 A:YAL9000 3.0 19.1 1.0
O16 A:YAL9000 3.4 31.7 1.0
O A:PHE377 3.5 26.5 1.0
CD1 A:PHE378 3.6 30.1 1.0
C17 A:YAL9000 3.6 29.1 1.0
C23 A:YAL9000 3.7 30.1 1.0
CZ A:PHE388 3.8 28.2 1.0
N15 A:YAL9000 3.8 28.7 1.0
C9 A:YAL9000 4.0 30.7 1.0
C7 A:YAL9000 4.0 28.1 1.0
CG2 A:VAL376 4.1 27.6 1.0
C22 A:YAL9000 4.1 24.4 1.0
C18 A:YAL9000 4.1 29.9 1.0
C14 A:YAL9000 4.2 30.0 1.0
C26 A:YAL9000 4.2 28.7 1.0
C25 A:YAL9000 4.2 28.7 1.0
C31 A:YAL9000 4.3 19.8 1.0
CB A:PHE378 4.3 28.2 1.0
CE1 A:PHE388 4.3 34.4 1.0
C24 A:YAL9000 4.3 31.2 1.0
CG A:PHE378 4.4 33.5 1.0
CE1 A:PHE378 4.4 32.5 1.0
C8 A:YAL9000 4.5 24.2 1.0
C A:PHE377 4.5 29.4 1.0
CB A:VAL376 4.6 31.6 1.0
CE2 A:PHE388 4.8 29.2 1.0
CA A:PHE378 4.8 26.7 1.0
C4 A:YAL9000 4.9 26.3 1.0

Chlorine binding site 2 out of 4 in 8x7e

Go back to Chlorine Binding Sites List in 8x7e
Chlorine binding site 2 out of 4 in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl9000

b:31.5
occ:1.00
CL1 C:YAL9000 0.0 31.5 1.0
C11 C:YAL9000 1.7 22.2 1.0
C10 C:YAL9000 2.7 17.7 1.0
C6 C:YAL9000 2.7 22.1 1.0
N2 C:YAL9000 3.0 19.6 1.0
O16 C:YAL9000 3.3 31.9 1.0
C17 C:YAL9000 3.5 29.1 1.0
C23 C:YAL9000 3.6 25.0 1.0
C25 C:YAL9000 3.6 29.1 1.0
CD1 C:PHE378 3.7 29.9 1.0
C26 C:YAL9000 3.8 32.0 1.0
N15 C:YAL9000 3.8 31.2 1.0
O C:PHE377 3.8 25.4 1.0
CZ C:PHE388 3.8 28.8 1.0
C22 C:YAL9000 3.9 25.5 1.0
CG2 C:VAL376 3.9 21.0 1.0
C24 C:YAL9000 4.0 31.1 1.0
C9 C:YAL9000 4.0 22.7 1.0
C7 C:YAL9000 4.0 19.9 1.0
C18 C:YAL9000 4.0 27.6 1.0
C14 C:YAL9000 4.1 28.5 1.0
C31 C:YAL9000 4.2 23.7 1.0
CE1 C:PHE388 4.3 25.9 1.0
CB C:PHE378 4.4 24.6 1.0
CE1 C:PHE378 4.5 28.1 1.0
CG C:PHE378 4.5 32.2 1.0
C8 C:YAL9000 4.5 20.5 1.0
CB C:VAL376 4.7 24.7 1.0
C C:PHE377 4.7 25.8 1.0
CA C:PHE378 4.8 27.5 1.0
CE2 C:PHE388 4.9 26.7 1.0
C4 C:YAL9000 4.9 24.7 1.0

Chlorine binding site 3 out of 4 in 8x7e

Go back to Chlorine Binding Sites List in 8x7e
Chlorine binding site 3 out of 4 in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl9000

b:26.2
occ:1.00
CL1 E:YAL9000 0.0 26.2 1.0
C11 E:YAL9000 1.7 27.7 1.0
C10 E:YAL9000 2.7 27.9 1.0
C6 E:YAL9000 2.8 25.5 1.0
N2 E:YAL9000 3.0 23.6 1.0
CD1 E:PHE378 3.7 35.7 1.0
O16 E:YAL9000 3.7 31.6 1.0
C23 E:YAL9000 3.7 24.6 1.0
CZ E:PHE388 3.7 23.6 1.0
C17 E:YAL9000 3.8 27.4 1.0
CG2 E:VAL376 3.9 25.2 1.0
C9 E:YAL9000 4.0 27.7 1.0
O E:PHE377 4.0 34.3 1.0
C7 E:YAL9000 4.0 25.8 1.0
N15 E:YAL9000 4.0 29.9 1.0
C26 E:YAL9000 4.0 25.0 1.0
C25 E:YAL9000 4.2 23.8 1.0
C22 E:YAL9000 4.2 23.3 1.0
C31 E:YAL9000 4.2 21.6 1.0
C18 E:YAL9000 4.2 24.8 1.0
C24 E:YAL9000 4.3 25.0 1.0
CB E:PHE378 4.3 37.0 1.0
CE1 E:PHE388 4.3 32.3 1.0
C14 E:YAL9000 4.4 27.9 1.0
CB E:VAL376 4.4 29.2 1.0
CG E:PHE378 4.4 38.1 1.0
C8 E:YAL9000 4.5 23.9 1.0
CE1 E:PHE378 4.5 34.0 1.0
CA E:PHE378 4.6 34.8 1.0
C E:PHE377 4.6 32.1 1.0
CE2 E:PHE388 4.6 26.2 1.0
C28 E:YAL9000 4.8 30.6 1.0
N E:PHE378 4.9 37.2 1.0
C4 E:YAL9000 4.9 23.0 1.0
O3 E:YAL9000 5.0 25.4 1.0

Chlorine binding site 4 out of 4 in 8x7e

Go back to Chlorine Binding Sites List in 8x7e
Chlorine binding site 4 out of 4 in the Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Mutant Human Ror Gamma Ligand Binding Domain with Jte-151 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl9000

b:31.5
occ:1.00
CL1 G:YAL9000 0.0 31.5 1.0
C11 G:YAL9000 1.7 30.9 1.0
C10 G:YAL9000 2.7 27.4 1.0
C6 G:YAL9000 2.8 26.5 1.0
N2 G:YAL9000 3.1 28.6 1.0
CZ G:PHE388 3.4 32.9 1.0
O16 G:YAL9000 3.6 41.6 1.0
CD1 G:PHE378 3.7 38.0 1.0
C23 G:YAL9000 3.7 33.1 1.0
CG2 G:VAL376 3.7 34.1 1.0
C17 G:YAL9000 3.8 34.0 1.0
O G:PHE377 4.0 33.8 1.0
C9 G:YAL9000 4.0 29.6 1.0
N15 G:YAL9000 4.0 38.9 1.0
C7 G:YAL9000 4.0 29.7 1.0
CE1 G:PHE388 4.1 32.7 1.0
CE2 G:PHE388 4.2 36.5 1.0
C26 G:YAL9000 4.2 34.5 1.0
C22 G:YAL9000 4.2 31.8 1.0
CB G:VAL376 4.3 34.6 1.0
C25 G:YAL9000 4.3 34.5 1.0
C18 G:YAL9000 4.3 36.5 1.0
C24 G:YAL9000 4.4 33.9 1.0
C31 G:YAL9000 4.4 29.7 1.0
CB G:PHE378 4.4 37.4 1.0
C14 G:YAL9000 4.4 35.5 1.0
CE1 G:PHE378 4.5 36.9 1.0
CG G:PHE378 4.5 39.4 1.0
C8 G:YAL9000 4.5 25.4 1.0
C G:PHE377 4.7 34.1 1.0
CA G:PHE378 4.8 34.2 1.0
C28 G:YAL9000 4.8 35.3 1.0

Reference:

T.Maeba, K.Hirata, M.Kotoku, N.Seki, K.Maeda, S.Hirashima, H.Yamanaka, T.Sakai, S.Obika, A.Hori, Y.Hara, S.Noji, Y.Suwa, M.Yokota, S.Fujioka, T.Yamaguchi, Y.Katsuda, T.Hata, N.Miyagawa, K.Arita, Y.Nomura, T.Taniguchi, K.Asahina, Y.Aratsu, Y.Naka, T.Adachi, A.Nomura, S.Akai, S.I.Oshida, S.Pai, P.Crowe, E.Bradley, R.Steensma, H.Tao, M.Fenn, R.Babine, X.Li, S.Thacher, T.Soeta, Y.Ukaji, M.Shiozaki. Discovery and Sar of Jte-151: A Novel Ror Gamma Inhibitor For Clinical Development. J.Med.Chem. V. 67 952 2024.
ISSN: ISSN 0022-2623
PubMed: 38170624
DOI: 10.1021/ACS.JMEDCHEM.3C01933
Page generated: Tue Dec 10 19:28:23 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy