Chlorine in PDB 8xoy: The Crystal Structure of PTP1B From Biortus.

Enzymatic activity of The Crystal Structure of PTP1B From Biortus.

All present enzymatic activity of The Crystal Structure of PTP1B From Biortus.:
3.1.3.48;

Protein crystallography data

The structure of The Crystal Structure of PTP1B From Biortus., PDB code: 8xoy was solved by F.Wang, W.Cheng, Z.Lv, Q.Meng, J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.07 / 1.55
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 88.148, 88.148, 103.396, 90, 90, 120
R / Rfree (%) 15.9 / 18.4

Other elements in 8xoy:

The structure of The Crystal Structure of PTP1B From Biortus. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of PTP1B From Biortus. (pdb code 8xoy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the The Crystal Structure of PTP1B From Biortus., PDB code: 8xoy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 8xoy

Go back to Chlorine Binding Sites List in 8xoy
Chlorine binding site 1 out of 5 in the The Crystal Structure of PTP1B From Biortus.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of PTP1B From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:27.1
occ:1.00
 O A:HOH634 3.0 19.1 1.0
NE A:ARG24 3.2 29.4 1.0
NH1 A:ARG254 3.2 16.2 1.0
NH2 A:ARG254 3.3 14.3 1.0
O A:HOH835 3.6 33.4 1.0
O A:HOH730 3.7 43.8 1.0
CZ A:ARG254 3.7 14.6 1.0
CG A:ARG24 3.8 23.3 1.0
O A:HOH744 3.8 29.3 1.0
CA A:GLY259 3.8 12.3 1.0
CD A:ARG24 3.8 25.8 1.0
OH A:TYR20 4.1 15.8 1.0
CZ A:ARG24 4.1 35.5 1.0
NH2 A:ARG24 4.2 39.6 1.0
CB A:ARG24 4.5 21.6 1.0
C A:GLY259 4.5 12.8 1.0
O A:GLY259 4.6 13.2 1.0
O A:HOH878 4.6 42.8 1.0
O A:HOH704 4.6 15.4 1.0
N A:GLY259 4.7 11.8 1.0
O A:ILE261 4.9 13.0 1.0
NE A:ARG254 5.0 14.1 1.0

Chlorine binding site 2 out of 5 in 8xoy

Go back to Chlorine Binding Sites List in 8xoy
Chlorine binding site 2 out of 5 in the The Crystal Structure of PTP1B From Biortus.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of PTP1B From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:14.9
occ:1.00
 NH2 A:ARG45 3.1 12.7 1.0
NH1 A:ARG45 3.5 11.5 1.0
N A:ALA122 3.6 10.2 1.0
CD A:PRO89 3.7 15.7 1.0
C A:CYS121 3.7 11.4 1.0
CZ A:ARG45 3.8 11.5 1.0
CA A:ALA122 3.9 11.1 1.0
O A:CYS121 4.0 13.1 1.0
O A:LEU119 4.0 13.8 1.0
CB A:ALA122 4.1 12.8 1.0
CG A:PRO89 4.1 16.2 1.0
N A:CYS121 4.2 10.6 1.0
CA A:CYS121 4.2 11.5 1.0
O A:PRO87 4.3 10.5 1.0
CB A:LEU119 4.4 14.7 1.0
CA A:LEU88 4.4 11.9 1.0
O A:HOH716 4.5 21.7 1.0
CD2 A:LEU88 4.5 12.6 1.0
C A:LEU119 4.5 13.5 1.0
N A:PRO89 4.5 13.2 1.0
C A:LEU88 4.9 11.6 1.0
C A:LYS120 4.9 12.7 1.0

Chlorine binding site 3 out of 5 in 8xoy

Go back to Chlorine Binding Sites List in 8xoy
Chlorine binding site 3 out of 5 in the The Crystal Structure of PTP1B From Biortus.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of PTP1B From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:18.4
occ:1.00
 O A:HOH887 3.0 41.7 1.0
O A:HOH639 3.1 18.1 1.0
N A:VAL113 3.2 11.1 1.0
O A:HOH776 3.3 18.7 1.0
CE1 A:HIS175 3.5 13.0 1.0
CA A:ARG112 3.7 12.2 1.0
CG2 A:VAL113 3.8 12.5 0.4
CG1 A:VAL113 3.8 12.3 0.4
CB A:ARG112 3.9 13.3 1.0
CB A:VAL113 3.9 12.2 0.6
C A:ARG112 3.9 11.4 1.0
CG2 A:VAL113 3.9 12.7 0.6
NE2 A:HIS175 4.0 11.5 1.0
CB A:VAL113 4.1 12.1 0.4
CG A:ARG112 4.2 16.0 1.0
CA A:VAL113 4.2 11.4 0.6
O A:HOH731 4.2 32.4 1.0
CA A:VAL113 4.2 11.5 0.4
O A:HOH847 4.4 40.2 1.0
O A:HOH822 4.4 29.3 1.0
CH2 A:TRP125 4.4 13.3 1.0
CE A:MET109 4.6 11.8 1.0
ND1 A:HIS175 4.7 12.5 1.0
CZ2 A:TRP125 4.9 13.6 1.0
O A:ASN111 4.9 11.5 1.0
CD A:ARG112 4.9 20.8 1.0
N A:ARG112 5.0 11.9 1.0

Chlorine binding site 4 out of 5 in 8xoy

Go back to Chlorine Binding Sites List in 8xoy
Chlorine binding site 4 out of 5 in the The Crystal Structure of PTP1B From Biortus.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Crystal Structure of PTP1B From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:21.1
occ:1.00
 O A:HOH801 2.9 39.4 1.0
N A:GLY117 3.2 15.8 1.0
N A:LYS116 3.6 16.1 1.0
O A:HOH687 3.8 28.4 1.0
CA A:GLY117 3.8 16.7 1.0
CG A:MET114 4.0 19.1 0.4
CG A:MET114 4.1 13.9 0.6
CA A:LYS116 4.1 16.8 1.0
C A:LYS116 4.1 15.1 1.0
C A:GLU115 4.2 14.1 1.0
SD A:MET114 4.3 14.7 0.6
CA A:GLU115 4.5 13.7 1.0
O A:MET114 4.7 13.8 1.0
N A:GLU115 4.8 12.8 1.0
C A:MET114 4.8 13.3 1.0
SD A:MET114 4.9 23.5 0.4
O A:GLU115 5.0 14.0 1.0

Chlorine binding site 5 out of 5 in 8xoy

Go back to Chlorine Binding Sites List in 8xoy
Chlorine binding site 5 out of 5 in the The Crystal Structure of PTP1B From Biortus.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Crystal Structure of PTP1B From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:34.9
occ:1.00
 O A:HOH872 2.7 44.6 1.0
O A:HOH902 3.1 45.2 1.0
N A:LYS39 3.3 21.1 1.0
CG A:LYS39 3.5 26.4 1.0
CD A:PRO38 3.6 23.6 1.0
CB A:LYS39 3.6 24.1 1.0
N A:PRO38 3.8 21.6 1.0
CB A:PRO38 3.9 24.8 1.0
CB A:LEU37 3.9 19.2 1.0
CG A:PRO38 4.0 23.9 1.0
CD A:LYS39 4.1 31.2 1.0
CA A:LYS39 4.1 20.9 1.0
CA A:PRO38 4.2 22.1 1.0
C A:PRO38 4.2 21.4 1.0
C A:LEU37 4.3 21.7 1.0
CD2 A:LEU37 4.5 23.2 1.0
CA A:LEU37 4.6 19.4 1.0
CG A:LEU37 4.6 20.1 1.0
CE A:LYS39 4.7 35.8 1.0
CD1 A:LEU37 4.8 21.2 1.0
O A:HOH828 4.9 52.4 1.0
O A:HOH900 4.9 43.3 1.0

Reference:

F.Wang, W.Cheng, Z.Lv, Q.Meng, J.Li. The Crystal Structure of PTP1B From Biortus. To Be Published.
Page generated: Tue Jul 30 13:55:01 2024

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