Chlorine in PDB 8yak: Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase

The structure of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase also contains other interesting chemical elements:

Zinc

(Zn)

16 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase (pdb code 8yak). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase, PDB code: 8yak:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:78.8 occ:1.00 CLA A:97U503 0.0 78.8 1.0 CAC A:97U503 1.7 59.8 1.0 CAB A:97U503 2.7 55.9 1.0 HAH A:97U503 2.7 58.8 1.0 CAD A:97U503 2.7 62.5 1.0 HAB A:97U503 2.7 58.2 1.0 HAG A:97U503 2.9 58.0 1.0 CAG A:97U503 2.9 66.3 1.0 OQ1 A:KCX210 3.6 54.5 1.0 CAA A:97U503 4.0 58.4 1.0 CAE A:97U503 4.0 59.3 1.0 O A:LEU128 4.1 57.2 1.0 CE1 A:HIS85 4.3 43.5 1.0 HAI A:97U503 4.4 59.7 1.0 CB A:SER156 4.4 37.0 1.0 CAF A:97U503 4.4 61.0 1.0 CAH A:97U503 4.5 67.7 1.0 CA A:GLY129 4.5 49.3 1.0 CX A:KCX210 4.6 52.3 1.0 OG A:SER156 4.8 50.5 1.0 HA2 A:97U503 4.8 58.4 1.0 CE A:KCX210 4.8 56.0 1.0 ND1 A:HIS85 4.9 52.3 1.0 ZN A:ZN501 4.9 103.0 1.0

Chlorine binding site 2 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl503 b:78.8 occ:1.00 CLA B:97U503 0.0 78.8 1.0 CAC B:97U503 1.7 59.8 1.0 CAB B:97U503 2.7 55.9 1.0 HAH B:97U503 2.7 58.8 1.0 CAD B:97U503 2.7 62.5 1.0 HAB B:97U503 2.7 58.2 1.0 HAG B:97U503 2.9 58.0 1.0 CAG B:97U503 2.9 66.3 1.0 OQ1 B:KCX210 3.6 54.5 1.0 CAA B:97U503 4.0 58.4 1.0 CAE B:97U503 4.0 59.3 1.0 O B:LEU128 4.1 57.2 1.0 CE1 B:HIS85 4.3 43.5 1.0 CB B:SER156 4.4 37.0 1.0 HAI B:97U503 4.4 59.7 1.0 CAF B:97U503 4.4 61.0 1.0 CA B:GLY129 4.5 49.3 1.0 CAH B:97U503 4.5 67.7 1.0 CX B:KCX210 4.6 52.3 1.0 OG B:SER156 4.8 50.5 1.0 HA2 B:97U503 4.8 58.4 1.0 CE B:KCX210 4.8 56.0 1.0 ND1 B:HIS85 4.9 52.3 1.0 ZN B:ZN501 4.9 103.0 1.0

Chlorine binding site 3 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl503 b:78.8 occ:1.00 CLA C:97U503 0.0 78.8 1.0 CAC C:97U503 1.7 59.8 1.0 CAB C:97U503 2.7 55.9 1.0 HAH C:97U503 2.7 58.8 1.0 CAD C:97U503 2.7 62.5 1.0 HAB C:97U503 2.7 58.2 1.0 HAG C:97U503 2.9 58.0 1.0 CAG C:97U503 2.9 66.3 1.0 OQ1 C:KCX210 3.6 54.5 1.0 CAA C:97U503 4.0 58.4 1.0 CAE C:97U503 4.0 59.3 1.0 O C:LEU128 4.1 57.2 1.0 CE1 C:HIS85 4.3 43.5 1.0 HAI C:97U503 4.4 59.7 1.0 CB C:SER156 4.4 37.0 1.0 CAF C:97U503 4.4 61.0 1.0 CAH C:97U503 4.5 67.7 1.0 CA C:GLY129 4.5 49.3 1.0 CX C:KCX210 4.6 52.3 1.0 OG C:SER156 4.8 50.5 1.0 HA2 C:97U503 4.8 58.4 1.0 CE C:KCX210 4.8 56.0 1.0 ND1 C:HIS85 4.9 52.3 1.0 ZN C:ZN501 4.9 103.0 1.0

Chlorine binding site 4 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl503 b:78.8 occ:1.00 CLA D:97U503 0.0 78.8 1.0 CAC D:97U503 1.7 59.8 1.0 CAB D:97U503 2.7 55.9 1.0 HAH D:97U503 2.7 58.8 1.0 CAD D:97U503 2.7 62.5 1.0 HAB D:97U503 2.7 58.2 1.0 HAG D:97U503 2.9 58.0 1.0 CAG D:97U503 2.9 66.3 1.0 OQ1 D:KCX210 3.6 54.5 1.0 CAA D:97U503 4.0 58.4 1.0 CAE D:97U503 4.0 59.3 1.0 O D:LEU128 4.1 57.2 1.0 CE1 D:HIS85 4.3 43.5 1.0 CB D:SER156 4.4 37.0 1.0 HAI D:97U503 4.4 59.7 1.0 CAF D:97U503 4.4 61.0 1.0 CA D:GLY129 4.5 49.3 1.0 CAH D:97U503 4.5 67.7 1.0 CX D:KCX210 4.6 52.3 1.0 OG D:SER156 4.8 50.5 1.0 HA2 D:97U503 4.8 58.4 1.0 CE D:KCX210 4.8 56.0 1.0 ND1 D:HIS85 4.9 52.3 1.0 ZN D:ZN501 4.9 103.0 1.0

Chlorine binding site 5 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl503 b:78.8 occ:1.00 CLA E:97U503 0.0 78.8 1.0 CAC E:97U503 1.7 59.8 1.0 CAB E:97U503 2.7 55.9 1.0 HAH E:97U503 2.7 58.8 1.0 CAD E:97U503 2.7 62.5 1.0 HAB E:97U503 2.7 58.2 1.0 HAG E:97U503 2.9 58.0 1.0 CAG E:97U503 2.9 66.3 1.0 OQ1 E:KCX210 3.6 54.5 1.0 CAA E:97U503 4.0 58.4 1.0 CAE E:97U503 4.0 59.3 1.0 O E:LEU128 4.1 57.2 1.0 CE1 E:HIS85 4.3 43.5 1.0 HAI E:97U503 4.4 59.7 1.0 CB E:SER156 4.4 37.0 1.0 CAF E:97U503 4.4 61.0 1.0 CAH E:97U503 4.5 67.7 1.0 CA E:GLY129 4.5 49.3 1.0 CX E:KCX210 4.6 52.3 1.0 OG E:SER156 4.8 50.5 1.0 HA2 E:97U503 4.8 58.4 1.0 CE E:KCX210 4.8 56.0 1.0 ND1 E:HIS85 4.9 52.3 1.0 ZN E:ZN501 4.9 103.0 1.0

Chlorine binding site 6 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl503 b:78.8 occ:1.00 CLA F:97U503 0.0 78.8 1.0 CAC F:97U503 1.7 59.8 1.0 CAB F:97U503 2.7 55.9 1.0 HAH F:97U503 2.7 58.8 1.0 CAD F:97U503 2.7 62.5 1.0 HAB F:97U503 2.7 58.2 1.0 HAG F:97U503 2.9 58.0 1.0 CAG F:97U503 2.9 66.3 1.0 OQ1 F:KCX210 3.6 54.5 1.0 CAA F:97U503 4.0 58.4 1.0 CAE F:97U503 4.0 59.3 1.0 O F:LEU128 4.1 57.2 1.0 CE1 F:HIS85 4.3 43.5 1.0 CB F:SER156 4.4 37.0 1.0 HAI F:97U503 4.4 59.7 1.0 CAF F:97U503 4.4 61.0 1.0 CA F:GLY129 4.5 49.3 1.0 CAH F:97U503 4.5 67.7 1.0 CX F:KCX210 4.6 52.3 1.0 OG F:SER156 4.8 50.5 1.0 HA2 F:97U503 4.8 58.4 1.0 CE F:KCX210 4.8 56.0 1.0 ND1 F:HIS85 4.9 52.3 1.0 ZN F:ZN501 4.9 103.0 1.0

Chlorine binding site 7 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl503 b:78.8 occ:1.00 CLA G:97U503 0.0 78.8 1.0 CAC G:97U503 1.7 59.8 1.0 CAB G:97U503 2.7 55.9 1.0 HAH G:97U503 2.7 58.8 1.0 CAD G:97U503 2.7 62.5 1.0 HAB G:97U503 2.7 58.2 1.0 HAG G:97U503 2.9 58.0 1.0 CAG G:97U503 2.9 66.3 1.0 OQ1 G:KCX210 3.6 54.5 1.0 CAA G:97U503 4.0 58.4 1.0 CAE G:97U503 4.0 59.3 1.0 O G:LEU128 4.1 57.2 1.0 CE1 G:HIS85 4.3 43.5 1.0 HAI G:97U503 4.4 59.7 1.0 CB G:SER156 4.4 37.0 1.0 CAF G:97U503 4.4 61.0 1.0 CA G:GLY129 4.5 49.3 1.0 CAH G:97U503 4.5 67.7 1.0 CX G:KCX210 4.6 52.3 1.0 OG G:SER156 4.8 50.5 1.0 HA2 G:97U503 4.8 58.4 1.0 CE G:KCX210 4.8 56.0 1.0 ND1 G:HIS85 4.9 52.3 1.0 ZN G:ZN501 4.9 103.0 1.0

Chlorine binding site 8 out of 8 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl503 b:78.8 occ:1.00 CLA H:97U503 0.0 78.8 1.0 CAC H:97U503 1.7 59.8 1.0 CAB H:97U503 2.7 55.9 1.0 HAH H:97U503 2.7 58.8 1.0 CAD H:97U503 2.7 62.5 1.0 HAB H:97U503 2.7 58.2 1.0 HAG H:97U503 2.9 58.0 1.0 CAG H:97U503 2.9 66.3 1.0 OQ1 H:KCX210 3.6 54.5 1.0 CAA H:97U503 4.0 58.4 1.0 CAE H:97U503 4.0 59.3 1.0 O H:LEU128 4.1 57.2 1.0 CE1 H:HIS85 4.3 43.5 1.0 CB H:SER156 4.4 37.0 1.0 HAI H:97U503 4.4 59.7 1.0 CAF H:97U503 4.4 61.0 1.0 CAH H:97U503 4.5 67.7 1.0 CA H:GLY129 4.5 49.3 1.0 CX H:KCX210 4.6 52.3 1.0 OG H:SER156 4.8 50.5 1.0 HA2 H:97U503 4.8 58.4 1.0 CE H:KCX210 4.8 56.0 1.0 ND1 H:HIS85 4.9 52.3 1.0 ZN H:ZN501 4.9 103.0 1.0

Y.Hu, L.Dai, Y.Xu, D.Niu, X.Yang, Z.Xie, P.Shen, X.Li, H.Li, L.Zhang, J.Min, R.T.Guo, C.C.Chen. Functional Characterization and Structural Basis of An Efficient Ochratoxin A-Degrading Amidohydrolase. Int.J.Biol.Macromol. V. 278 34831 2024.
ISSN: ISSN 0141-8130
PubMed: 39163957
DOI: 10.1016/J.IJBIOMAC.2024.134831