Chlorine in PDB 8zpg: Sfx Reaction State Structure (20-40MIN) of Alanine Racemase

All present enzymatic activity of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase:
5.1.1.1;

The structure of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase, PDB code: 8zpg was solved by J.Kim, K.H.Nam, Y.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.32 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	90.2, 112.9, 91.8, 90, 114, 90
R / Rfree (%)	20.5 / 25.9

The binding sites of Chlorine atom in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase (pdb code 8zpg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase, PDB code: 8zpg:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:57.6 occ:1.00 NE A:ARG139 3.1 41.9 1.0 NH2 A:ARG139 3.3 40.8 1.0 CZ A:ARG139 3.7 39.9 1.0 ND2 A:ASN132 3.8 44.6 1.0 CB A:ARG139 3.9 50.0 1.0 N A:LEU140 4.0 49.1 1.0 O A:LEU140 4.1 45.4 1.0 CD A:ARG139 4.3 41.7 1.0 CG A:ARG139 4.3 44.4 1.0 CG A:MET137 4.4 53.3 1.0 CB A:LEU140 4.5 46.6 1.0 CA A:LEU140 4.7 46.0 1.0 CB A:HIS169 4.7 46.8 1.0 C A:LEU140 4.8 44.8 1.0 CG A:ASN132 4.8 48.6 1.0 OD1 A:ASN132 4.8 49.6 1.0 CB A:MET137 4.8 48.0 1.0 CA A:ARG139 4.9 46.7 1.0 C A:ARG139 4.9 46.9 1.0

Chlorine binding site 2 out of 4 in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl402 b:56.5 occ:1.00 O B:HOH509 3.3 41.6 1.0 NE B:ARG139 3.3 39.8 1.0 ND2 B:ASN132 3.5 50.5 1.0 NH2 B:ARG139 3.6 50.1 1.0 N B:LEU140 3.8 49.8 1.0 CZ B:ARG139 3.9 44.6 1.0 CB B:ARG139 3.9 45.9 1.0 O B:LEU140 4.1 50.2 1.0 CB B:LEU140 4.3 52.5 1.0 CD B:ARG139 4.4 44.6 1.0 CG B:ARG139 4.4 43.2 1.0 CA B:LEU140 4.4 49.7 1.0 CG B:ASN132 4.5 53.9 1.0 OD1 B:ASN132 4.5 50.3 1.0 C B:LEU140 4.6 49.8 1.0 C B:ARG139 4.7 46.5 1.0 CA B:ARG139 4.8 46.6 1.0 CG B:MET137 4.8 48.2 1.0 CD1 B:LEU140 4.8 45.9 1.0 CG B:LEU140 5.0 48.2 1.0 CB B:HIS169 5.0 47.6 1.0

Chlorine binding site 3 out of 4 in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl404 b:53.0 occ:1.00 NE C:ARG139 3.4 46.9 1.0 ND2 C:ASN132 3.6 49.9 1.0 NH2 C:ARG139 3.6 53.6 1.0 CB C:ARG139 3.8 49.3 1.0 N C:LEU140 3.8 49.3 1.0 O C:LEU140 3.9 57.3 1.0 CZ C:ARG139 4.0 49.7 1.0 CG C:ARG139 4.3 44.4 1.0 CB C:LEU140 4.4 46.2 1.0 CD C:ARG139 4.4 49.8 1.0 CA C:LEU140 4.4 50.7 1.0 C C:LEU140 4.5 50.8 1.0 CG C:ASN132 4.6 55.2 1.0 OD1 C:ASN132 4.7 53.8 1.0 C C:ARG139 4.7 48.5 1.0 CA C:ARG139 4.7 54.6 1.0 CD1 C:LEU140 4.8 43.7 1.0 CG C:MET137 4.9 58.5 1.0 CG C:LEU140 4.9 46.2 1.0

Chlorine binding site 4 out of 4 in the Sfx Reaction State Structure (20-40MIN) of Alanine Racemase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Sfx Reaction State Structure (20-40MIN) of Alanine Racemase within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl503 b:52.0 occ:1.00 O D:HOH608 3.0 44.6 1.0 NE D:ARG139 3.3 46.2 1.0 ND2 D:ASN132 3.4 43.0 1.0 NH2 D:ARG139 3.6 44.2 1.0 O D:HOH607 3.7 42.5 1.0 O D:LEU140 3.7 43.0 1.0 N D:LEU140 3.8 45.1 1.0 CB D:ARG139 3.9 46.4 1.0 CZ D:ARG139 3.9 45.8 1.0 CB D:LEU140 4.1 39.8 1.0 CG D:ARG139 4.3 42.7 1.0 CA D:LEU140 4.3 46.2 1.0 C D:LEU140 4.4 46.0 1.0 CD D:ARG139 4.4 41.2 1.0 CG D:ASN132 4.5 43.6 1.0 OD1 D:ASN132 4.7 46.6 1.0 C D:ARG139 4.8 44.9 1.0 CA D:ARG139 4.9 47.0 1.0 CB D:HIS169 4.9 48.4 1.0 CG D:MET137 4.9 51.3 1.0 CG D:LEU140 5.0 49.4 1.0

J.Kim, K.H.Nam, Y.Cho. Sfx Reaction State Structure (20-40MIN) of Alanine Racemase To Be Published.