Chlorine in PDB 9b12: Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1

Enzymatic activity of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1

All present enzymatic activity of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1:
2.3.2.31;

Protein crystallography data

The structure of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1, PDB code: 9b12 was solved by M.A.Michel, S.Scutts, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.15 / 1.81
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 110.413, 70.191, 193.944, 90, 102.25, 90
R / Rfree (%) 23.1 / 26.9

Other elements in 9b12:

The structure of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 (pdb code 9b12). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1, PDB code: 9b12:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 1 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl601

b:69.5
occ:1.00
 NH1 I:ARG351 2.7 34.0 0.6
NZ F:LYS429 3.0 31.7 1.0
CZ I:ARG351 3.7 41.2 0.6
NH2 I:ARG351 3.7 29.9 0.6
OE1 E:GLU434 3.8 31.6 1.0
CE F:LYS429 4.0 31.4 1.0
CD2 E:LEU430 4.3 24.7 1.0
CD F:LYS429 4.6 25.2 1.0
NH2 I:ARG377 4.6 27.4 1.0
O E:HOH607 4.7 45.6 1.0
O I:HOH506 4.7 29.4 1.0
CD E:GLU434 4.7 29.3 1.0
NE I:ARG351 4.9 44.3 0.6
CG E:LEU430 5.0 25.6 1.0

Chlorine binding site 2 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 2 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:62.4
occ:1.00
 NH2 B:ARG150 2.5 89.2 1.0
CZ B:ARG150 3.0 91.6 1.0
NE B:ARG150 3.2 91.2 1.0
NH1 B:ARG148 3.6 39.5 1.0
CZ B:ARG148 3.9 37.5 1.0
NH1 B:ARG150 4.0 79.6 1.0
NE B:ARG148 4.2 46.0 1.0
CD B:ARG148 4.4 42.5 1.0
CD B:ARG150 4.4 84.8 1.0
NH2 B:ARG148 4.4 47.7 1.0
CG B:ARG150 4.9 80.2 1.0

Chlorine binding site 3 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 3 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl403

b:54.7
occ:1.00
 NH2 J:ARG351 3.0 33.6 0.5
N J:ARG351 3.2 58.7 1.0
O J:ARG351 3.2 55.5 1.0
O J:GLY352 3.3 47.0 1.0
CZ J:ARG351 3.4 46.9 0.5
C J:ARG351 3.5 60.4 1.0
NH1 J:ARG351 3.6 43.3 0.5
CA J:ARG351 3.8 58.3 0.5
CA J:ARG351 3.9 58.3 0.5
NZ E:LYS429 4.0 44.8 1.0
NE J:ARG351 4.1 39.7 0.5
CD J:ARG377 4.2 23.4 1.0
NE J:ARG377 4.2 30.0 1.0
N J:GLY352 4.2 51.3 1.0
CD1 J:TRP354 4.2 23.9 1.0
CB J:ARG351 4.3 62.0 0.5
C J:GLY352 4.3 45.6 1.0
CZ J:ARG377 4.4 28.1 1.0
CB J:ARG351 4.5 62.5 0.5
O F:HOH703 4.6 28.7 1.0
CB J:TRP354 4.7 29.1 1.0
NH1 J:ARG377 4.7 28.5 1.0
CG J:TRP354 4.7 29.4 1.0
CG J:ARG351 4.8 62.8 0.5
CA J:GLY352 4.8 48.0 1.0
O J:ALA365 4.8 36.9 1.0
CA J:ALA365 5.0 34.9 1.0
NH2 J:ARG351 5.0 42.4 0.5

Reference:

M.A.Michel, S.Scutts, D.Komander. Linkage and Substrate Specificity Conferred By Nzf Ubiquitin Binding Domains To Be Published.
Page generated: Sun Aug 11 10:56:47 2024

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