Chlorine in PDB 9b8g: 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus

Protein crystallography data

The structure of 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus, PDB code: 9b8g was solved by J.Balk, Y.T.Ting, S.Bibby, D.Watterson, F.Coulibaly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.32 / 2.66
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.667, 125.329, 96.928, 90, 93.95, 90
R / Rfree (%) 20.1 / 25.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus (pdb code 9b8g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus, PDB code: 9b8g:

Chlorine binding site 1 out of 1 in 9b8g

Go back to Chlorine Binding Sites List in 9b8g
Chlorine binding site 1 out of 1 in the 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:56.4
occ:1.00
H A:SER121 2.7 49.5 1.0
HH22 L:ARG108 2.9 41.2 1.0
HG A:SER121 3.2 40.3 1.0
OG A:SER121 3.2 33.5 1.0
O L:HOH410 3.3 30.6 1.0
HA A:SER120 3.5 54.6 1.0
N A:SER121 3.5 41.1 1.0
HB2 L:ALA111 3.5 43.9 1.0
HB3 A:SER121 3.6 43.7 1.0
HB1 L:ALA111 3.6 43.9 1.0
NH2 L:ARG108 3.6 34.2 1.0
O L:HOH415 3.6 44.0 1.0
HG A:SER120 3.8 43.7 1.0
CB A:SER121 3.9 36.4 1.0
HH21 L:ARG108 3.9 41.2 1.0
CB L:ALA111 4.0 36.5 1.0
HA L:ALA111 4.1 42.0 1.0
HH12 L:ARG108 4.2 40.6 1.0
CA A:SER120 4.3 45.4 1.0
CA A:SER121 4.3 38.2 1.0
HG2 A:PRO14 4.4 50.7 1.0
C A:SER120 4.4 42.0 1.0
HG3 A:PRO14 4.5 50.7 1.0
OG A:SER120 4.5 36.3 1.0
CZ L:ARG108 4.6 35.1 1.0
CA L:ALA111 4.6 34.9 1.0
HB3 A:SER87 4.6 58.3 1.0
HB2 A:SER121 4.7 43.7 1.0
NH1 L:ARG108 4.8 33.8 1.0
H A:ALA122 4.8 45.2 1.0
HB3 L:ALA111 4.8 43.9 1.0
CG A:PRO14 4.9 42.1 1.0
CB A:SER120 4.9 41.4 1.0
HA A:SER121 5.0 45.9 1.0
HB2 A:SER120 5.0 49.8 1.0

Reference:

S.Bibby, J.Balk, Y.T.Ting, F.Coulibaly, D.Watterson. 2C9 Fab Antibody Fragment Against the E Protein of the Yellow Fever Virus To Be Published.
Page generated: Wed Nov 13 07:52:46 2024

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