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Chlorine in PDB 9dam: A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion

Protein crystallography data

The structure of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion, PDB code: 9dam was solved by M.J.Pedroza Romo, J.C.Averett, A.Keliiliki, E.W.Wilson, C.Smith, D.Hansen, B.Averett, J.Gonzalez, E.W.Noakes, R.Nickles, T.Doukov, J.D.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.40 / 1.78
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 83.29, 83.29, 58.434, 90, 90, 120
R / Rfree (%) 20.5 / 22.1

Other elements in 9dam:

The structure of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion also contains other interesting chemical elements:

Sodium (Na) 1 atom
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion (pdb code 9dam). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion, PDB code: 9dam:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 1 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:85.9
occ:1.00
CD A:LYS141 3.6 48.8 1.0
HG2 A:LYS141 4.5 66.3 1.0
CG A:LYS141 4.6 50.3 1.0
HB3 A:LYS141 4.7 51.9 1.0

Chlorine binding site 2 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 2 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:72.8
occ:1.00
H A:HIS5 2.7 81.0 1.0
HH A:TYR182 2.8 81.9 1.0
HE1 A:TYR182 3.2 72.0 1.0
HA A:HIS4 3.3 100.9 1.0
OH A:TYR182 3.4 54.2 1.0
H A:HIS6 3.5 70.8 1.0
N A:HIS5 3.5 79.3 1.0
CE1 A:TYR182 3.9 47.8 1.0
HB2 A:HIS5 3.9 68.6 1.0
CA A:HIS4 4.0 90.5 1.0
N A:HIS4 4.1 91.2 1.0
HD2 A:HIS5 4.2 69.8 1.0
CZ A:TYR182 4.2 49.0 1.0
N A:HIS6 4.2 70.9 1.0
C A:HIS4 4.3 84.5 1.0
H A:HIS4 4.3 97.6 1.0
CA A:HIS5 4.5 77.0 1.0
CB A:HIS5 4.6 73.5 1.0
C A:HIS5 4.8 72.4 1.0
CB A:HIS6 4.8 70.3 1.0
CD2 A:HIS5 4.9 78.0 1.0

Chlorine binding site 3 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 3 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:66.6
occ:1.00
HE A:ARG20 2.2 75.1 1.0
HA A:ALA17 2.8 47.3 1.0
NE A:ARG20 3.0 59.1 1.0
HG3 A:ARG20 3.4 71.8 1.0
HB2 A:ALA17 3.5 61.1 1.0
CA A:ALA17 3.5 45.0 1.0
HG2 A:ARG20 3.6 71.8 1.0
N A:ALA17 3.6 46.2 1.0
O A:HOH445 3.7 56.8 1.0
CZ A:ARG20 3.7 60.3 1.0
O A:LEU15 3.7 46.6 1.0
C A:PRO16 3.8 45.6 1.0
CG A:ARG20 3.8 56.9 1.0
H A:ALA17 3.9 50.1 1.0
CD A:ARG20 4.0 55.6 1.0
CB A:ALA17 4.0 51.7 1.0
O A:PRO16 4.1 40.8 1.0
HA A:PRO16 4.2 43.4 1.0
HD3 A:ARG20 4.4 68.6 1.0
HB1 A:ALA17 4.4 61.1 1.0
CA A:PRO16 4.5 41.0 1.0
HD2 A:ARG20 4.7 68.6 1.0
C A:LEU15 4.8 42.3 1.0
HB3 A:ALA17 4.8 61.1 1.0
C A:ALA17 4.8 43.0 1.0

Reference:

M.J.Pedroza Romo, J.C.Averett, A.Keliiliki, E.W.Wilson, C.Smith, D.Hansen, B.Averett, J.Gonzalez, E.W.Noakes, R.Nickles, T.Doukov, J.D.Moody. Optimal Telsam-Target Protein Linker Character Is Target Protein Dependent To Be Published.
Page generated: Thu Oct 31 18:10:39 2024

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