Chlorine in PDB 9dam: A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion

Protein crystallography data

The structure of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion, PDB code: 9dam was solved by M.J.Pedroza Romo, J.C.Averett, A.Keliiliki, E.W.Wilson, C.Smith, D.Hansen, B.Averett, J.Gonzalez, E.W.Noakes, R.Nickles, T.Doukov, J.D.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.40 / 1.78
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 83.29, 83.29, 58.434, 90, 90, 120
R / Rfree (%) 20.5 / 22.1

Other elements in 9dam:

The structure of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion also contains other interesting chemical elements:

Sodium (Na) 1 atom
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion (pdb code 9dam). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion, PDB code: 9dam:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 1 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:85.9
occ:1.00
CD A:LYS141 3.6 48.8 1.0
HG2 A:LYS141 4.5 66.3 1.0
CG A:LYS141 4.6 50.3 1.0
HB3 A:LYS141 4.7 51.9 1.0

Chlorine binding site 2 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 2 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:72.8
occ:1.00
H A:HIS5 2.7 81.0 1.0
HH A:TYR182 2.8 81.9 1.0
HE1 A:TYR182 3.2 72.0 1.0
HA A:HIS4 3.3 100.9 1.0
OH A:TYR182 3.4 54.2 1.0
H A:HIS6 3.5 70.8 1.0
N A:HIS5 3.5 79.3 1.0
CE1 A:TYR182 3.9 47.8 1.0
HB2 A:HIS5 3.9 68.6 1.0
CA A:HIS4 4.0 90.5 1.0
N A:HIS4 4.1 91.2 1.0
HD2 A:HIS5 4.2 69.8 1.0
CZ A:TYR182 4.2 49.0 1.0
N A:HIS6 4.2 70.9 1.0
C A:HIS4 4.3 84.5 1.0
H A:HIS4 4.3 97.6 1.0
CA A:HIS5 4.5 77.0 1.0
CB A:HIS5 4.6 73.5 1.0
C A:HIS5 4.8 72.4 1.0
CB A:HIS6 4.8 70.3 1.0
CD2 A:HIS5 4.9 78.0 1.0

Chlorine binding site 3 out of 3 in 9dam

Go back to Chlorine Binding Sites List in 9dam
Chlorine binding site 3 out of 3 in the A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:66.6
occ:1.00
HE A:ARG20 2.2 75.1 1.0
HA A:ALA17 2.8 47.3 1.0
NE A:ARG20 3.0 59.1 1.0
HG3 A:ARG20 3.4 71.8 1.0
HB2 A:ALA17 3.5 61.1 1.0
CA A:ALA17 3.5 45.0 1.0
HG2 A:ARG20 3.6 71.8 1.0
N A:ALA17 3.6 46.2 1.0
O A:HOH445 3.7 56.8 1.0
CZ A:ARG20 3.7 60.3 1.0
O A:LEU15 3.7 46.6 1.0
C A:PRO16 3.8 45.6 1.0
CG A:ARG20 3.8 56.9 1.0
H A:ALA17 3.9 50.1 1.0
CD A:ARG20 4.0 55.6 1.0
CB A:ALA17 4.0 51.7 1.0
O A:PRO16 4.1 40.8 1.0
HA A:PRO16 4.2 43.4 1.0
HD3 A:ARG20 4.4 68.6 1.0
HB1 A:ALA17 4.4 61.1 1.0
CA A:PRO16 4.5 41.0 1.0
HD2 A:ARG20 4.7 68.6 1.0
C A:LEU15 4.8 42.3 1.0
HB3 A:ALA17 4.8 61.1 1.0
C A:ALA17 4.8 43.0 1.0

Reference:

M.J.Pedroza Romo, J.C.Averett, A.Keliiliki, E.W.Wilson, C.Smith, D.Hansen, B.Averett, J.Gonzalez, E.W.Noakes, R.Nickles, T.Doukov, J.D.Moody. Optimal Telsam-Target Protein Linker Character Is Target Protein Dependent To Be Published.
Page generated: Thu Oct 31 18:10:39 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy