Chlorine in PDB 9dn4: Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N

The structure of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N, PDB code: 9dn4 was solved by S.Lovell, A.Cooper, K.P.Battaile, S.Hegde, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.41 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	64.726, 68.025, 118.615, 90, 100.16, 90
R / Rfree (%)	17.6 / 22.3

The binding sites of Chlorine atom in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N (pdb code 9dn4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N, PDB code: 9dn4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:51.1 occ:1.00 N A:GLY146 3.1 21.3 1.0 NZ A:LYS145 3.5 38.1 1.0 CD A:LYS145 3.8 50.9 1.0 CA A:LYS145 3.9 22.9 1.0 CA A:GLY146 3.9 25.4 1.0 C A:LYS145 4.0 21.4 1.0 CE A:LYS145 4.2 47.1 1.0 CG A:LYS145 4.6 29.9 1.0 O A:GLY146 4.6 27.0 1.0 O A:HOH414 4.7 36.1 1.0 O A:THR144 4.7 24.7 1.0 C A:GLY146 4.7 20.9 1.0 CB A:SER231 4.8 25.9 1.0 CB A:LYS145 4.8 25.6 1.0 N A:LYS145 4.9 22.7 1.0

Chlorine binding site 2 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:59.3 occ:1.00 CE B:LYS64 3.2 52.4 1.0 O2 B:GOL301 3.3 46.5 1.0 NZ B:LYS58 3.6 45.1 1.0 O B:HOH458 3.7 32.4 1.0 NZ B:LYS61 4.1 59.2 1.0 CD B:LYS64 4.1 38.8 1.0 CE B:LYS58 4.3 40.6 1.0 NZ B:LYS64 4.3 46.7 1.0 C2 B:GOL301 4.3 41.4 1.0 OE1 B:GLN56 4.5 23.7 1.0 CE B:LYS61 4.5 61.1 1.0 CG B:LYS58 4.7 34.2 1.0 O B:HOH411 4.7 33.0 1.0 C1 B:GOL301 4.7 48.6 1.0 CD B:LYS58 4.9 32.0 1.0

Chlorine binding site 3 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl302 b:56.3 occ:1.00 OG1 C:THR88 3.5 31.4 1.0 NH1 C:ARG43 3.6 49.4 1.0 NH2 C:ARG43 3.9 53.5 1.0 N C:THR88 3.9 26.9 1.0 CZ C:ARG43 4.2 53.6 1.0 CA C:GLY87 4.3 34.2 1.0 CB C:THR88 4.6 26.9 1.0 C C:GLY87 4.6 30.2 1.0 O C:SER86 4.7 33.5 1.0 CA C:THR88 4.8 32.9 1.0 OD2 C:ASP89 4.9 49.5 1.0

Chlorine binding site 4 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:58.0 occ:1.00 N C:SER79 3.5 26.5 1.0 OG C:SER79 3.5 43.2 1.0 CA C:PRO78 3.9 26.9 1.0 O C:HOH488 4.1 34.1 1.0 CB C:SER79 4.2 38.1 1.0 C C:PRO78 4.2 27.1 1.0 CB C:PRO78 4.3 27.9 1.0 CA C:SER79 4.5 31.6 1.0

Chlorine binding site 5 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl304 b:61.4 occ:1.00 NH2 C:ARG230 3.7 45.9 1.0 NH1 C:ARG230 3.8 50.5 1.0 NZ C:LYS209 3.9 63.1 1.0 CZ C:ARG230 4.2 47.2 1.0 CE C:LYS209 4.5 56.0 1.0

Chlorine binding site 6 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl303 b:60.5 occ:1.00 N D:GLY146 3.3 29.7 1.0 CA D:GLY146 4.0 28.8 1.0 CA D:LYS145 4.1 30.8 1.0 C D:LYS145 4.2 27.2 1.0 CG D:LYS145 4.7 34.2 1.0 O D:GLY146 4.8 29.1 1.0 CB D:SER231 4.8 29.3 1.0 O D:THR144 4.9 28.8 1.0 C D:GLY146 4.9 31.7 1.0 CB D:LYS145 4.9 28.9 1.0

Chlorine binding site 7 out of 7 in the Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3- 6S97N within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl101 b:63.2 occ:1.00 N1 E:G4 3.5 68.8 1.0 O6 E:G4 3.6 67.5 1.0 NH1 B:ARG85 4.0 36.6 1.0 C6 E:G4 4.0 67.5 1.0 C2 E:G4 4.5 76.2 1.0 N2 E:G4 4.6 89.2 1.0 CZ B:ARG85 4.9 30.8 1.0

S.Lovell, J.Wang. Crystal Structure of A Sars-Cov-2 20-Mer Rna in Complex with Fab BL3-6S97N To Be Published.