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Chlorine in PDB 9e9g: Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain

Enzymatic activity of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain

All present enzymatic activity of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain:
2.7.11.30;

Protein crystallography data

The structure of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain, PDB code: 9e9g was solved by S.E.White, T.A.Schwartze, A.P.Hinck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.22 / 1.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.042, 128.387, 29.654, 90, 90, 90
R / Rfree (%) 16 / 18.2

Other elements in 9e9g:

The structure of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain (pdb code 9e9g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain, PDB code: 9e9g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9e9g

Go back to Chlorine Binding Sites List in 9e9g
Chlorine binding site 1 out of 2 in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:42.4
occ:0.40
 NA A:NA208 2.1 36.3 0.6
H A:LYS128 2.4 51.8 1.0
NA A:NA210 2.6 33.4 0.8
O A:LYS128 2.8 50.8 1.0
O A:GLU131 2.8 26.9 1.0
HA A:LYS127 3.1 40.7 1.0
N A:LYS128 3.2 43.0 1.0
O A:HOH371 3.3 33.6 0.5
HA A:THR132 3.3 26.7 1.0
O A:HOH412 3.7 39.1 0.5
O A:HOH419 3.7 63.0 0.7
HB2 A:LYS128 3.7 68.6 1.0
C A:LYS128 3.8 50.5 1.0
HD3 A:LYS127 3.9 53.5 1.0
CA A:LYS127 3.9 33.8 1.0
C A:GLU131 4.0 24.4 1.0
HD2 A:LYS127 4.0 53.5 1.0
CA A:LYS128 4.0 49.9 1.0
O A:LYS126 4.1 26.8 1.0
C A:LYS127 4.1 39.0 1.0
CA A:THR132 4.2 22.1 1.0
OE2 A:GLU125 4.3 33.1 1.0
H A:PHE133 4.3 22.7 1.0
CB A:LYS128 4.4 57.1 1.0
HB3 A:LYS127 4.4 46.9 1.0
H A:GLU131 4.4 35.4 1.0
CD A:LYS127 4.4 44.5 1.0
O A:HOH403 4.4 37.9 0.4
N A:THR132 4.5 21.2 1.0
HG23 A:THR132 4.7 31.1 1.0
CB A:LYS127 4.7 38.9 1.0
HZ2 A:LYS127 4.8 56.3 1.0
N A:PHE133 4.9 18.8 1.0
HA A:LYS128 4.9 60.0 1.0
C A:LYS126 4.9 24.8 1.0
N A:LYS127 4.9 29.6 1.0
HG3 A:GLU131 4.9 34.2 1.0
OG1 A:THR132 5.0 29.9 1.0
N A:PRO129 5.0 53.0 1.0

Chlorine binding site 2 out of 2 in 9e9g

Go back to Chlorine Binding Sites List in 9e9g
Chlorine binding site 2 out of 2 in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:48.0
occ:0.70
 H B:GLN81 2.1 37.4 1.0
O B:HOH322 2.4 33.4 0.3
HA B:TYR80 2.8 28.3 1.0
OD1 B:ASN56 2.9 41.1 1.0
N B:GLN81 2.9 31.0 1.0
HB3 B:GLN81 3.4 55.5 1.0
O B:HOH380 3.6 44.1 0.5
CA B:TYR80 3.6 23.5 1.0
O B:GLN81 3.7 47.1 1.0
C B:TYR80 3.7 23.4 1.0
CA B:GLN81 3.9 40.0 1.0
O B:CYS79 3.9 27.1 1.0
CB B:GLN81 3.9 46.1 1.0
HD1 B:TYR80 4.0 32.1 1.0
HB3 B:PRO55 4.0 39.7 1.0
HB2 B:GLN81 4.0 55.5 1.0
CD1 B:TYR80 4.0 26.7 1.0
CG B:ASN56 4.0 42.6 1.0
H B:ASN56 4.1 34.4 1.0
CG B:TYR80 4.1 21.7 1.0
C B:GLN81 4.2 50.5 1.0
HD21 B:ASN56 4.3 60.7 1.0
CB B:TYR80 4.4 19.6 1.0
CE1 B:TYR80 4.5 28.6 1.0
HA B:ASN56 4.5 36.5 1.0
N B:ASN56 4.6 28.6 1.0
HG22 B:ILE78 4.6 30.6 1.0
N B:TYR80 4.6 24.0 1.0
ND2 B:ASN56 4.6 50.5 1.0
C B:CYS79 4.7 25.9 1.0
HA B:GLN81 4.7 48.1 1.0
HE1 B:TYR80 4.7 34.4 1.0
CD2 B:TYR80 4.8 23.6 1.0
HG21 B:ILE78 4.8 30.6 1.0
HB2 B:PRO55 4.8 39.7 1.0
CB B:PRO55 4.8 33.0 1.0
HB2 B:TYR80 4.8 23.6 1.0
O B:TYR80 4.9 24.8 1.0
CA B:ASN56 5.0 30.3 1.0

Reference:

S.E.White, T.A.Schwartze, A.P.Hinck. Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain To Be Published.
Page generated: Sat Feb 8 17:30:49 2025

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