Chlorine in PDB 9e9g: Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain

Enzymatic activity of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain

All present enzymatic activity of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain:
2.7.11.30;

Protein crystallography data

The structure of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain, PDB code: 9e9g was solved by S.E.White, T.A.Schwartze, A.P.Hinck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.22 / 1.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.042, 128.387, 29.654, 90, 90, 90
R / Rfree (%) 16 / 18.2

Other elements in 9e9g:

The structure of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain (pdb code 9e9g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain, PDB code: 9e9g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9e9g

Go back to Chlorine Binding Sites List in 9e9g
Chlorine binding site 1 out of 2 in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:42.4
occ:0.40
 NA A:NA208 2.1 36.3 0.6
H A:LYS128 2.4 51.8 1.0
NA A:NA210 2.6 33.4 0.8
O A:LYS128 2.8 50.8 1.0
O A:GLU131 2.8 26.9 1.0
HA A:LYS127 3.1 40.7 1.0
N A:LYS128 3.2 43.0 1.0
O A:HOH371 3.3 33.6 0.5
HA A:THR132 3.3 26.7 1.0
O A:HOH412 3.7 39.1 0.5
O A:HOH419 3.7 63.0 0.7
HB2 A:LYS128 3.7 68.6 1.0
C A:LYS128 3.8 50.5 1.0
HD3 A:LYS127 3.9 53.5 1.0
CA A:LYS127 3.9 33.8 1.0
C A:GLU131 4.0 24.4 1.0
HD2 A:LYS127 4.0 53.5 1.0
CA A:LYS128 4.0 49.9 1.0
O A:LYS126 4.1 26.8 1.0
C A:LYS127 4.1 39.0 1.0
CA A:THR132 4.2 22.1 1.0
OE2 A:GLU125 4.3 33.1 1.0
H A:PHE133 4.3 22.7 1.0
CB A:LYS128 4.4 57.1 1.0
HB3 A:LYS127 4.4 46.9 1.0
H A:GLU131 4.4 35.4 1.0
CD A:LYS127 4.4 44.5 1.0
O A:HOH403 4.4 37.9 0.4
N A:THR132 4.5 21.2 1.0
HG23 A:THR132 4.7 31.1 1.0
CB A:LYS127 4.7 38.9 1.0
HZ2 A:LYS127 4.8 56.3 1.0
N A:PHE133 4.9 18.8 1.0
HA A:LYS128 4.9 60.0 1.0
C A:LYS126 4.9 24.8 1.0
N A:LYS127 4.9 29.6 1.0
HG3 A:GLU131 4.9 34.2 1.0
OG1 A:THR132 5.0 29.9 1.0
N A:PRO129 5.0 53.0 1.0

Chlorine binding site 2 out of 2 in 9e9g

Go back to Chlorine Binding Sites List in 9e9g
Chlorine binding site 2 out of 2 in the Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:48.0
occ:0.70
 H B:GLN81 2.1 37.4 1.0
O B:HOH322 2.4 33.4 0.3
HA B:TYR80 2.8 28.3 1.0
OD1 B:ASN56 2.9 41.1 1.0
N B:GLN81 2.9 31.0 1.0
HB3 B:GLN81 3.4 55.5 1.0
O B:HOH380 3.6 44.1 0.5
CA B:TYR80 3.6 23.5 1.0
O B:GLN81 3.7 47.1 1.0
C B:TYR80 3.7 23.4 1.0
CA B:GLN81 3.9 40.0 1.0
O B:CYS79 3.9 27.1 1.0
CB B:GLN81 3.9 46.1 1.0
HD1 B:TYR80 4.0 32.1 1.0
HB3 B:PRO55 4.0 39.7 1.0
HB2 B:GLN81 4.0 55.5 1.0
CD1 B:TYR80 4.0 26.7 1.0
CG B:ASN56 4.0 42.6 1.0
H B:ASN56 4.1 34.4 1.0
CG B:TYR80 4.1 21.7 1.0
C B:GLN81 4.2 50.5 1.0
HD21 B:ASN56 4.3 60.7 1.0
CB B:TYR80 4.4 19.6 1.0
CE1 B:TYR80 4.5 28.6 1.0
HA B:ASN56 4.5 36.5 1.0
N B:ASN56 4.6 28.6 1.0
HG22 B:ILE78 4.6 30.6 1.0
N B:TYR80 4.6 24.0 1.0
ND2 B:ASN56 4.6 50.5 1.0
C B:CYS79 4.7 25.9 1.0
HA B:GLN81 4.7 48.1 1.0
HE1 B:TYR80 4.7 34.4 1.0
CD2 B:TYR80 4.8 23.6 1.0
HG21 B:ILE78 4.8 30.6 1.0
HB2 B:PRO55 4.8 39.7 1.0
CB B:PRO55 4.8 33.0 1.0
HB2 B:TYR80 4.8 23.6 1.0
O B:TYR80 4.9 24.8 1.0
CA B:ASN56 5.0 30.3 1.0

Reference:

S.E.White, T.A.Schwartze, A.P.Hinck. Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain To Be Published.
Page generated: Sat Feb 8 17:30:49 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy