Chlorine in PDB 9f7l: Bartonella Henselae Nrnc Bound to Deoxy-Pgg

The structure of Bartonella Henselae Nrnc Bound to Deoxy-Pgg, PDB code: 9f7l was solved by S.Mortensen, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.57 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.334, 128.047, 128.71, 90, 94.82, 90
R / Rfree (%)	17.6 / 21

The structure of Bartonella Henselae Nrnc Bound to Deoxy-Pgg also contains other interesting chemical elements:

Sodium

(Na)

17 atoms

The binding sites of Chlorine atom in the Bartonella Henselae Nrnc Bound to Deoxy-Pgg (pdb code 9f7l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Bartonella Henselae Nrnc Bound to Deoxy-Pgg, PDB code: 9f7l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Bartonella Henselae Nrnc Bound to Deoxy-Pgg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Bartonella Henselae Nrnc Bound to Deoxy-Pgg within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:41.8 occ:1.00 N A:ASP97 3.1 41.0 1.0 NZ A:LYS76 3.2 36.6 1.0 N A:VAL98 3.4 40.1 1.0 O A:LEU69 3.5 40.1 1.0 CB A:ASP97 3.6 45.3 1.0 CA A:ARG72 3.6 41.0 1.0 O A:ASP71 3.7 39.5 1.0 C A:ASP71 3.8 40.0 1.0 CA A:ASP97 3.8 42.6 1.0 N A:ARG72 3.8 39.5 1.0 CE A:LYS76 3.9 36.8 1.0 C A:SER70 3.9 40.5 1.0 CG2 A:VAL98 3.9 37.9 1.0 C A:ASP97 4.1 43.8 1.0 C A:PRO96 4.1 41.4 1.0 O A:SER70 4.1 42.9 1.0 CA A:PRO96 4.1 39.0 1.0 CA A:SER70 4.1 42.8 1.0 N A:ASP71 4.1 39.1 1.0 CB A:VAL98 4.2 40.5 1.0 CB A:ARG72 4.3 41.6 1.0 CA A:VAL98 4.3 39.3 1.0 CB A:PRO96 4.4 34.1 1.0 C A:LEU69 4.5 39.7 1.0 CG A:ASP97 4.5 47.5 1.0 CA A:ASP71 4.6 40.0 1.0 O A:VAL98 4.7 41.3 1.0 N A:SER70 4.8 39.3 1.0 O A:ILE74 4.8 38.3 1.0 C A:ARG72 4.8 43.3 1.0 OD2 A:ASP97 4.8 51.8 1.0 C A:VAL98 5.0 41.0 1.0

Chlorine binding site 2 out of 2 in the Bartonella Henselae Nrnc Bound to Deoxy-Pgg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Bartonella Henselae Nrnc Bound to Deoxy-Pgg within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:46.1 occ:1.00 NZ C:LYS76 3.1 41.0 1.0 N C:ASP97 3.2 46.3 1.0 O C:LEU69 3.4 42.7 1.0 N C:VAL98 3.4 46.2 1.0 O C:ASP71 3.8 44.1 1.0 CA C:ARG72 3.8 43.1 1.0 C C:SER70 3.8 44.1 1.0 CE C:LYS76 3.8 39.5 1.0 CA C:ASP97 3.9 48.4 1.0 C C:ASP71 3.9 43.9 1.0 CB C:ASP97 3.9 46.8 1.0 O C:SER70 3.9 43.4 1.0 CG2 C:VAL98 4.0 45.7 1.0 CA C:PRO96 4.0 45.5 1.0 N C:ARG72 4.0 42.1 1.0 CA C:SER70 4.0 44.5 1.0 C C:PRO96 4.1 47.0 1.0 C C:ASP97 4.1 46.9 1.0 CB C:VAL98 4.2 46.2 1.0 CB C:PRO96 4.2 42.9 1.0 N C:ASP71 4.2 43.0 1.0 C C:LEU69 4.3 43.2 1.0 CA C:VAL98 4.3 47.1 1.0 CB C:ARG72 4.4 41.1 1.0 CG C:ASP97 4.6 50.4 1.0 N C:SER70 4.6 42.8 1.0 O C:VAL98 4.6 43.9 1.0 CA C:ASP71 4.7 42.4 1.0 O C:ILE74 4.9 43.4 1.0 C C:ARG72 5.0 43.8 1.0 C C:VAL98 5.0 45.7 1.0 OD2 C:ASP97 5.0 52.1 1.0

S.Mortensen, H.Sondermann. Unique Dinucleases with Dna Specificity Are Associated with Genomic Islands in Actinomycetes and Clostridia To Be Published.