Chlorine in PDB 9g7k: Staphylococcus Aureus Mazf in Complex with Nanobody 12

The structure of Staphylococcus Aureus Mazf in Complex with Nanobody 12, PDB code: 9g7k was solved by V.Zorzini, S.Haesaerts, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.86 / 2.09
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	52.19, 61.27, 97.31, 89.85, 83.89, 67.19
R / Rfree (%)	18.9 / 23.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Staphylococcus Aureus Mazf in Complex with Nanobody 12 (pdb code 9g7k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Staphylococcus Aureus Mazf in Complex with Nanobody 12, PDB code: 9g7k:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:53.0 occ:1.00 NE A:ARG49 3.5 56.2 1.0 OG1 A:THR47 3.6 42.4 1.0 NH2 A:ARG24 3.6 42.1 1.0 NH2 A:ARG49 3.6 51.5 1.0 NH1 A:ARG24 3.9 41.3 1.0 CZ A:ARG49 4.0 54.4 1.0 CB A:ARG49 4.1 43.1 1.0 CZ A:ARG24 4.2 43.0 1.0 OE1 A:GLN20 4.3 57.7 1.0 CG A:ARG49 4.5 43.2 1.0 N A:ARG49 4.5 43.9 1.0 CD A:ARG49 4.6 51.4 1.0 NE2 A:GLN20 4.6 56.9 1.0 CB A:THR47 4.6 42.2 1.0 N A:GLY48 4.7 48.2 1.0 CD A:GLN20 4.9 55.2 1.0 CA A:ARG49 5.0 44.1 1.0

Chlorine binding site 2 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:75.8 occ:1.00 OG B:SER95 3.4 44.7 1.0 OH B:TYR66 3.4 63.1 1.0 OE2 B:GLU62 3.6 73.8 1.0 CB B:SER95 4.3 49.2 1.0 CB B:LYS98 4.3 51.0 1.0 CD B:LYS98 4.4 53.8 1.0 CZ B:TYR66 4.5 65.2 1.0 CD B:GLU62 4.6 74.5 1.0 CE2 B:TYR66 4.6 67.6 1.0 N B:LYS98 4.7 48.5 1.0 CE B:LYS98 4.7 53.4 1.0 OE1 B:GLU62 4.7 68.1 1.0 NZ B:LYS98 4.8 50.9 1.0 CB B:ASP97 5.0 62.9 1.0 CA B:LYS98 5.0 48.4 1.0 CG B:LYS98 5.0 51.7 1.0

Chlorine binding site 3 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:74.5 occ:1.00 N D:GLY8 3.7 46.7 1.0 CB D:SER7 3.8 55.5 1.0 CA D:SER7 4.0 53.3 1.0 C D:SER7 4.4 50.0 1.0 O D:HOH356 4.6 57.0 1.0 CA D:GLY8 4.7 48.4 1.0

Chlorine binding site 4 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl202 b:82.0 occ:1.00 N D:GLY26 3.4 65.5 1.0 CA D:GLY26 3.9 66.2 1.0 CB D:SER25 4.3 74.3 1.0 C D:SER25 4.4 62.0 1.0 CA D:SER25 4.5 67.0 1.0 C D:GLY26 4.7 63.9 1.0 OG D:SER25 5.0 76.3 1.0

Chlorine binding site 5 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl201 b:69.7 occ:1.00 N E:GLY48 3.4 55.7 1.0 NH2 E:ARG24 3.7 53.8 1.0 CA E:GLY48 4.0 59.1 1.0 CZ E:ARG49 4.1 73.4 1.0 NH2 E:ARG49 4.2 75.4 1.0 NH1 E:ARG49 4.2 68.0 1.0 CG E:ARG49 4.2 76.7 1.0 N E:ARG49 4.3 67.0 1.0 OG1 E:THR47 4.3 45.9 1.0 C E:GLY48 4.4 67.4 1.0 NE E:ARG49 4.4 78.5 1.0 C E:THR47 4.4 48.1 1.0 CZ E:ARG24 4.5 53.3 1.0 CA E:THR47 4.5 45.0 1.0 NH1 E:ARG24 4.5 54.0 1.0 CD E:ARG49 4.9 79.0 1.0

Chlorine binding site 6 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl201 b:63.7 occ:1.00 N F:VAL15 3.3 48.0 1.0 CA F:PRO14 3.7 56.6 1.0 O F:VAL15 3.8 49.6 1.0 CG2 F:VAL15 3.9 43.7 1.0 C F:PRO14 4.0 50.0 1.0 O F:HOH316 4.0 56.3 1.0 CB F:SER13 4.1 83.2 1.0 CB F:PRO14 4.3 58.2 1.0 CA F:VAL15 4.3 42.2 1.0 CA F:SER13 4.5 73.8 1.0 C F:VAL15 4.5 43.8 1.0 CB F:VAL15 4.7 42.5 1.0 N F:PRO14 4.9 60.8 1.0

Chlorine binding site 7 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl201 b:63.8 occ:1.00 N G:GLY56 3.3 46.3 1.0 ND2 G:ASN52 3.4 39.8 1.0 CA G:GLY54 3.6 43.8 1.0 C G:GLY54 3.7 44.7 1.0 CA G:GLY56 3.7 45.5 1.0 O G:HOH356 3.7 59.5 1.0 N G:GLY55 4.0 43.8 1.0 O G:GLY54 4.0 52.3 1.0 OD1 G:ASN52 4.2 38.5 1.0 CG G:ASN52 4.2 39.8 1.0 N G:GLY54 4.3 46.4 1.0 C G:GLY55 4.4 46.5 1.0 C G:GLY56 4.8 42.3 1.0 CA G:GLY55 4.8 43.8 1.0 O G:HOH320 4.9 51.6 1.0 N G:SER57 5.0 41.6 1.0

Chlorine binding site 8 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl202 b:91.2 occ:1.00 O A:HOH353 3.6 57.6 1.0 O G:HOH373 3.7 46.7 1.0 OG G:SER17 4.0 53.4 1.0 O G:HOH382 4.1 54.9 1.0 N G:SER17 4.4 42.0 1.0 CA G:GLY16 4.6 43.9 1.0 CB G:SER17 4.6 41.5 1.0 C G:GLY16 4.8 42.8 1.0 NZ A:LYS100 4.8 67.6 1.0

Chlorine binding site 9 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl203 b:70.8 occ:1.00 NH1 G:ARG114 3.6 51.5 1.0 CZ G:TYR95 4.2 41.6 1.0 CE1 G:TYR95 4.3 32.8 1.0 OH G:TYR95 4.4 41.2 1.0 CE2 G:TYR95 4.5 37.8 1.0 CE3 G:TRP120 4.6 40.4 1.0 CD1 G:LEU45 4.6 30.5 1.0 CD2 G:LEU45 4.7 41.1 1.0 CD1 G:TYR95 4.7 31.5 1.0 CZ3 G:TRP120 4.7 35.4 1.0 CD G:ARG114 4.8 63.8 1.0 CD2 G:TYR95 4.8 35.2 1.0 CZ G:ARG114 4.9 55.6 1.0 CD2 G:TRP120 4.9 42.1 1.0 CG G:TYR95 5.0 35.2 1.0 CB G:ARG114 5.0 59.2 1.0 CG G:ARG114 5.0 59.0 1.0

Chlorine binding site 10 out of 11 in the Staphylococcus Aureus Mazf in Complex with Nanobody 12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Staphylococcus Aureus Mazf in Complex with Nanobody 12 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl204 b:79.7 occ:1.00 N G:LEU11 3.5 46.9 1.0 CA G:GLY10 3.7 45.6 1.0 C G:GLY10 4.2 45.2 1.0 O G:LEU11 4.5 47.9 1.0 CA G:LEU11 4.6 46.3 1.0 CB G:LEU11 4.6 45.7 1.0 O G:GLY9 4.8 42.6 1.0 N G:GLY10 5.0 40.3 1.0

M.Prolic-Kalinsek, V.Zorzini, S.Haesaerts, P.De Bruyn, R.Loris. Nanobody-Mediated Activation and Inhibition of Staphylococcus Aureus Mazf To Be Published.