Chlorine in PDB 9h2d: Human IFT172 C-Terminal U-Box Domain Crystal Structure

Protein crystallography data

The structure of Human IFT172 C-Terminal U-Box Domain Crystal Structure, PDB code: 9h2d was solved by E.Lorentzen, N.K.Zacharia, S.Bhogaraju, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.57 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.967, 90.507, 67.423, 90, 97.42, 90
R / Rfree (%) 18.9 / 23.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human IFT172 C-Terminal U-Box Domain Crystal Structure (pdb code 9h2d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Human IFT172 C-Terminal U-Box Domain Crystal Structure, PDB code: 9h2d:

Chlorine binding site 1 out of 1 in 9h2d

Go back to Chlorine Binding Sites List in 9h2d
Chlorine binding site 1 out of 1 in the Human IFT172 C-Terminal U-Box Domain Crystal Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human IFT172 C-Terminal U-Box Domain Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1802

b:85.6
occ:1.00
O A:HOH1905 3.2 66.5 1.0
N A:GLN1476 3.2 64.2 1.0
C A:ASN1474 3.2 66.8 1.0
CA A:ASN1474 3.3 70.0 1.0
N A:ASN1477 3.3 60.4 1.0
CB A:ASN1474 3.4 65.5 1.0
O A:ASN1474 3.6 74.8 1.0
N A:PRO1475 3.6 68.5 1.0
N A:PHE1478 3.6 65.6 1.0
CA A:GLN1476 3.7 71.3 1.0
CB A:GLN1476 3.8 75.5 1.0
CD1 A:PHE1478 3.8 64.7 1.0
C A:GLN1476 3.8 67.8 1.0
CG A:PHE1478 3.9 67.9 1.0
CB A:PHE1478 4.1 62.8 1.0
ND2 A:ASN1474 4.2 66.3 1.0
CD A:PRO1475 4.2 70.8 1.0
C A:PRO1475 4.2 65.5 1.0
CA A:ASN1477 4.3 58.9 1.0
CG A:ASN1474 4.3 68.6 1.0
CE1 A:PHE1478 4.4 78.1 1.0
C A:ASN1477 4.4 57.4 1.0
CA A:PHE1478 4.5 62.4 1.0
CA A:PRO1475 4.5 68.2 1.0
CD2 A:PHE1478 4.6 80.1 1.0
OE1 A:GLN1476 4.6 68.7 1.0
N A:ASN1474 4.8 69.8 1.0
O A:GLN1476 4.8 58.0 1.0
CG A:PRO1475 4.9 74.2 1.0
CG A:GLN1476 4.9 83.7 1.0
CZ A:PHE1478 5.0 76.6 1.0

Reference:

E.Lorentzen, N.K.Zacharia, S.Bhogaraju. Intraflagellar Transport Protein IFT172 Contains A C-Terminal Ubiquitin-Binding U-Box-Like Domain Involved in Ciliary Signaling To Be Published.
Page generated: Tue Dec 10 19:31:41 2024

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