Chlorine in PDB 9h3e: Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip

Enzymatic activity of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip

All present enzymatic activity of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip, PDB code: 9h3e was solved by P.Pachl, L.Coudray, R.Vincent, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.40 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.16, 79.16, 38.15, 90, 90, 90
R / Rfree (%) 13.8 / 17.7

Other elements in 9h3e:

The structure of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip (pdb code 9h3e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip, PDB code: 9h3e:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9h3e

Go back to Chlorine Binding Sites List in 9h3e
Chlorine binding site 1 out of 3 in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:29.0
occ:0.91
 OH A:TYR23 3.0 20.2 1.0
CZ A:TYR23 3.6 18.2 1.0
CE2 A:TYR23 3.7 17.6 1.0
CA A:GLY104 4.2 19.3 1.0
O A:ARG21 4.7 25.8 1.0
N A:GLY104 4.8 20.8 1.0
CE1 A:TYR23 4.8 19.1 1.0
CD2 A:TYR23 4.9 18.4 1.0

Chlorine binding site 2 out of 3 in 9h3e

Go back to Chlorine Binding Sites List in 9h3e
Chlorine binding site 2 out of 3 in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:34.1
occ:0.83
 OG A:SER24 3.0 26.8 1.0
N A:GLY26 3.0 20.0 1.0
CB A:SER24 3.4 23.6 1.0
CA A:GLY26 3.5 19.3 1.0
CD1 A:ILE124 3.7 32.9 1.0
CA A:GLN121 3.8 30.3 1.0
N A:LEU25 4.0 19.3 1.0
N A:GLN121 4.1 26.7 1.0
C A:SER24 4.2 20.5 1.0
CB A:GLN121 4.2 35.9 1.0
C A:LEU25 4.2 18.9 1.0
CG1 A:ILE124 4.3 28.9 1.0
CG A:GLN121 4.3 43.6 1.0
O A:VAL120 4.4 25.2 1.0
C A:VAL120 4.4 25.2 1.0
CG2 A:VAL120 4.4 25.9 1.0
CA A:SER24 4.5 21.0 1.0
CA A:LEU25 4.5 19.6 1.0
C A:GLY26 4.6 18.6 1.0
O A:SER24 4.7 21.2 1.0
N A:ASN27 4.7 17.5 1.0
CB A:LEU25 4.8 21.7 1.0
C A:GLN121 5.0 29.6 1.0

Chlorine binding site 3 out of 3 in 9h3e

Go back to Chlorine Binding Sites List in 9h3e
Chlorine binding site 3 out of 3 in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:30.6
occ:0.70
 O A:HOH343 3.1 24.2 1.0
O A:THR69 3.2 26.2 1.0
O A:HOH377 3.3 47.6 1.0
N A:THR69 3.3 20.8 1.0
C A:THR69 3.6 23.6 1.0
N A:ARG68 3.6 20.9 1.0
O A:HOH369 3.6 56.3 1.0
OD1 A:ASN65 3.6 32.2 1.0
C A:GLY67 3.7 23.1 1.0
N A:GLY67 3.7 22.0 1.0
CA A:GLY67 3.8 22.2 1.0
OG A:SER72 3.8 30.5 1.0
CA A:THR69 3.9 19.9 1.0
O A:HOH376 4.0 32.5 1.0
CB A:THR69 4.3 19.7 1.0
C A:ARG68 4.3 23.6 1.0
OD1 A:ASP66 4.3 19.1 1.0
N A:PRO70 4.4 25.9 1.0
O A:GLY67 4.4 27.5 1.0
CA A:ARG68 4.4 23.6 1.0
O A:HOH337 4.7 49.7 1.0
CA A:PRO70 4.7 30.0 1.0
NA A:NA201 4.8 22.9 0.9
C A:ASP66 4.8 19.9 1.0
N A:ASP66 4.8 17.6 1.0
CG A:ASN65 4.9 30.5 1.0
OG1 A:THR69 4.9 20.2 1.0

Reference:

P.Pachl, L.Coudray, R.Vincent, L.Nilles, H.Scheer, C.Ritzenthaler, A.Fejfarova, P.Rezacova, S.Engilberge, C.Sauter. Protein Crystallization and Structure Determination at Room Temperature in the Crystalchip. Febs Open Bio 2024.
ISSN: ESSN 2211-5463
PubMed: 39572886
DOI: 10.1002/2211-5463.13932
Page generated: Tue Dec 10 19:31:40 2024

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