Chlorine in PDB 9irz: Crystal Structure of Yhaj Dna-Binding Domain

The structure of Crystal Structure of Yhaj Dna-Binding Domain, PDB code: 9irz was solved by M.Kim, R.Kang, S.E.Ryu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.82 / 1.76
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	117.157, 117.157, 35.092, 90, 90, 120
R / Rfree (%)	18.1 / 22.1

The binding sites of Chlorine atom in the Crystal Structure of Yhaj Dna-Binding Domain (pdb code 9irz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Yhaj Dna-Binding Domain, PDB code: 9irz:

Chlorine binding site 1 out of 1 in the Crystal Structure of Yhaj Dna-Binding Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yhaj Dna-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:16.2 occ:1.00 O B:HOH339 3.2 19.8 1.0 NH1 B:ARG75 3.2 12.8 1.0 CG B:GLU72 3.5 13.1 1.0 CD B:ARG75 3.5 12.7 1.0 CA B:GLU72 3.8 17.0 1.0 CB B:GLU72 3.8 17.1 1.0 CZ B:ARG75 4.2 14.7 1.0 CD B:GLU72 4.2 16.3 1.0 NE B:ARG75 4.3 14.1 1.0 O B:GLU72 4.4 16.4 1.0 OE2 B:GLU72 4.6 18.1 1.0 C B:GLU72 4.6 16.5 1.0 CG B:ARG75 4.7 14.9 1.0 CB B:ARG75 4.7 12.7 1.0 N B:GLU72 4.8 13.5 1.0 OE1 B:GLU72 4.9 19.9 1.0 O B:HOH305 4.9 32.0 1.0 O B:LEU71 5.0 14.9 1.0 O B:HOH346 5.0 24.8 1.0

M.Kim, R.Kang, H.M.Park, E.B.Cho, H.R.Lee, S.E.Ryu. High-Affinity Promotor Binding of Yhaj Mediates A Low Signal Leakage For Effective Dnt Detection. Front Microbiol 2025.
ISSN: ESSN 1664-302X
DOI: 10.3389/FMICB.2024.1510655