Chlorine in PDB 9k9z: Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)

Enzymatic activity of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)

All present enzymatic activity of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm):
3.2.1.17;

Protein crystallography data

The structure of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm), PDB code: 9k9z was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.51 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.03, 79.03, 38.24, 90, 90, 90
R / Rfree (%) 17.7 / 20.8

Other elements in 9k9z:

The structure of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm) (pdb code 9k9z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm), PDB code: 9k9z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9k9z

Go back to Chlorine Binding Sites List in 9k9z
Chlorine binding site 1 out of 2 in the Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:33.8
occ:1.00
OH A:TYR41 2.9 24.6 1.0
CZ A:TYR41 3.7 22.6 1.0
CE2 A:TYR41 3.7 21.6 1.0
CA A:GLY122 4.0 29.4 1.0
N A:GLY122 4.6 27.9 1.0
O A:HOH318 4.6 35.8 1.0
O A:ARG39 4.7 32.4 1.0
CE1 A:TYR41 4.9 23.9 1.0
CD2 A:TYR41 4.9 21.8 1.0

Chlorine binding site 2 out of 2 in 9k9z

Go back to Chlorine Binding Sites List in 9k9z
Chlorine binding site 2 out of 2 in the Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:41.6
occ:1.00
OE1 A:GLN139 2.8 55.2 1.0
OG A:SER42 2.9 30.2 1.0
N A:GLY44 3.0 22.2 1.0
CA A:GLY44 3.4 24.6 1.0
CB A:SER42 3.4 28.4 1.0
CA A:GLN139 3.7 36.0 1.0
CD1 A:ILE142 3.8 38.9 1.0
CD A:GLN139 3.9 58.0 1.0
N A:GLN139 4.0 32.5 1.0
CB A:GLN139 4.0 39.6 1.0
N A:LEU43 4.0 25.4 1.0
C A:SER42 4.1 28.0 1.0
C A:LEU43 4.2 25.0 1.0
O A:VAL138 4.3 30.1 1.0
CG2 A:VAL138 4.3 26.2 1.0
C A:VAL138 4.3 32.4 1.0
CG1 A:ILE142 4.3 32.6 1.0
CA A:SER42 4.4 28.2 1.0
CG A:GLN139 4.4 43.5 1.0
C A:GLY44 4.5 25.3 1.0
CA A:LEU43 4.6 26.7 1.0
O A:SER42 4.6 25.2 1.0
N A:ASN45 4.6 21.4 1.0
C A:GLN139 4.9 33.9 1.0
CB A:LEU43 4.9 28.5 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Wed Nov 13 07:58:40 2024

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