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Chlorine in PDB 9kx8: Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose

Enzymatic activity of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose

All present enzymatic activity of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose:
3.2.2.22;

Protein crystallography data

The structure of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose, PDB code: 9kx8 was solved by A.Saeed, C.Betzel, H.Brognaro, P.Rajaiah Prabhu, B.Alves Franca, B.Khaliq, S.Mehmood, A.Akrem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.77 / 2.28
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.859, 107.859, 311.386, 90, 90, 120
R / Rfree (%) 21 / 23.1

Other elements in 9kx8:

The structure of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose (pdb code 9kx8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose, PDB code: 9kx8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9kx8

Go back to Chlorine Binding Sites List in 9kx8
Chlorine binding site 1 out of 2 in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:112.2
occ:1.00
NE A:ARG143 3.6 84.1 1.0
NH2 A:ARG143 3.7 84.2 1.0
N A:SER65 3.9 82.7 1.0
CB A:SER65 4.0 77.6 1.0
CZ A:ARG143 4.1 86.1 1.0
O A:GLY63 4.1 80.7 1.0
O A:SER65 4.4 78.4 1.0
CA A:SER65 4.4 74.8 1.0
CD A:ARG143 4.6 81.9 1.0
OG A:SER65 4.7 83.2 1.0
C A:ASP64 4.8 83.8 1.0
CA A:ASP64 4.9 80.7 1.0
C A:SER65 4.9 79.8 1.0

Chlorine binding site 2 out of 2 in 9kx8

Go back to Chlorine Binding Sites List in 9kx8
Chlorine binding site 2 out of 2 in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:105.0
occ:1.00
CG A:GLN42 3.7 96.8 1.0
OG A:SER41 3.9 86.1 1.0
N A:GLN42 3.9 81.7 1.0
CA A:SER41 4.1 78.9 1.0
CB A:SER41 4.1 81.1 1.0
NE2 A:GLN42 4.3 100.0 1.0
CB A:SER30 4.3 86.5 1.0
CD A:GLN42 4.5 98.6 1.0
C A:SER41 4.6 80.2 1.0
CB A:GLN42 4.7 90.7 1.0
OG A:SER30 4.9 86.3 1.0
CA A:GLN42 4.9 88.0 1.0

Reference:

A.Saeed, C.Betzel, H.Brognaro, P.Rajaiah Prabhu, B.Alves Franca, B.Khaliq, S.Mehmood, A.Akrem. Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose To Be Published.
Page generated: Sat Feb 8 17:35:26 2025

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