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Chlorine in PDB 7kss: Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN)

Enzymatic activity of Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN)

All present enzymatic activity of Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN), PDB code: 7kss was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.84 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.023, 68.767, 110.27, 90, 90, 90
R / Rfree (%) 16 / 17.7

Other elements in 7kss:

The structure of Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN) also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN) (pdb code 7kss). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN), PDB code: 7kss:

Chlorine binding site 1 out of 1 in 7kss

Go back to Chlorine Binding Sites List in 7kss
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:47.0
occ:0.57
 OG A:SER172 2.0 39.4 0.4
O A:HOH824 2.8 41.4 1.0
CB A:SER172 3.1 33.9 0.6
CB A:SER172 3.2 33.8 0.4
CA A:SER172 3.5 28.6 0.6
CA A:SER172 3.6 28.6 0.4
NH1 A:ARG175 3.6 38.6 0.6
N A:GLY174 3.7 22.5 1.0
N A:ARG175 3.8 19.6 0.6
O6 D:DG1 3.8 24.1 1.0
N A:ARG175 3.8 19.8 0.4
C A:SER172 3.9 25.8 0.6
C A:SER172 3.9 25.8 0.4
CA A:GLY174 4.0 21.2 1.0
CG A:ARG175 4.2 23.6 0.4
CG A:ARG175 4.2 23.6 0.6
N A:GLU173 4.3 25.0 1.0
C6 D:DG1 4.3 21.1 1.0
O A:SER172 4.3 24.2 0.6
O A:SER172 4.4 24.2 0.4
C A:GLY174 4.4 19.4 1.0
OG A:SER172 4.4 39.9 0.6
CB A:ARG175 4.7 21.7 0.4
CD A:ARG175 4.7 26.6 0.6
CB A:ARG175 4.7 21.7 0.6
O A:HOH808 4.7 43.9 1.0
N4 T:DC4 4.7 23.0 1.0
C5 D:DG1 4.8 21.7 1.0
CZ A:ARG175 4.8 33.3 0.6
C A:GLU173 4.8 21.7 1.0
N7 D:DG1 4.8 23.1 1.0
CA A:ARG175 4.9 20.2 0.6
CA A:ARG175 4.9 20.3 0.4
CD A:ARG175 4.9 27.0 0.4
N A:SER172 5.0 27.6 0.6
N A:SER172 5.0 27.8 0.4

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Watching A Double Strand Break Repair Polymerase Insert A Pro-Mutagenic Oxidized Nucleotide. Nat Commun V. 12 2059 2021.
ISSN: ESSN 2041-1723
PubMed: 33824325
DOI: 10.1038/S41467-021-21354-6
Page generated: Sun Jul 13 03:27:50 2025

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