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Chlorine in PDB 7ltb: Crystal Structure of Keratinicyclin B

Protein crystallography data

The structure of Crystal Structure of Keratinicyclin B, PDB code: 7ltb was solved by K.M.Davis, P.D.Jeffrey, M.R.Seyedsayamdost, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.82 / 0.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.316, 29.667, 32.209, 90, 90, 90
R / Rfree (%) 14.6 / 15.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Keratinicyclin B (pdb code 7ltb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Keratinicyclin B, PDB code: 7ltb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7ltb

Go back to Chlorine Binding Sites List in 7ltb
Chlorine binding site 1 out of 2 in the Crystal Structure of Keratinicyclin B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Keratinicyclin B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl6

b:9.1
occ:0.85
CL A:OMY6 0.0 9.1 0.8
CE1 A:OMY6 1.7 8.0 1.0
CZ A:OMY6 2.7 7.5 1.0
CD1 A:OMY6 2.7 7.7 1.0
HD1 A:OMY6 2.8 9.3 1.0
H31 F:Z6G2 2.9 14.0 1.0
OCZ A:OMY6 2.9 7.7 1.0
H12N F:Z6G2 3.0 15.2 1.0
C5 A:GHP4 3.3 7.6 1.0
H6 A:GHP4 3.5 8.9 1.0
C6 A:GHP4 3.6 7.4 1.0
O A:HOH218 3.6 20.3 1.0
H2O F:Z6G2 3.7 14.2 1.0
O2 F:Z6G2 3.7 11.8 1.0
C3 F:Z6G2 3.7 11.7 1.0
N1 F:Z6G2 3.8 12.7 1.0
O A:HOH204 3.9 13.4 1.0
CE2 A:OMY6 4.0 7.8 1.0
CG A:OMY6 4.0 7.6 1.0
C4 A:GHP4 4.2 7.6 1.0
O A:HOH220 4.3 30.3 1.0
H11N F:Z6G2 4.3 15.2 1.0
C4 F:Z6G2 4.3 11.1 1.0
H51 F:Z6G2 4.4 12.3 1.0
O A:GHP4 4.4 7.6 1.0
H61 J:Z6G2 4.4 15.4 1.0
CD2 A:OMY6 4.5 7.6 1.0
HN'3 F:Z6G2 4.6 15.2 1.0
C1 A:GHP4 4.6 7.5 1.0
O4 A:GHP4 4.6 7.7 1.0
H63 J:Z6G2 4.6 15.4 1.0
H62 J:Z6G2 4.8 15.4 1.0
HE2 A:OMY6 4.8 9.3 1.0
HA A:GHP5 4.8 8.7 1.0
C6 J:Z6G2 4.9 12.8 1.0
C5 F:Z6G2 5.0 10.3 1.0
H1 F:BGC1 5.0 10.2 1.0
C A:GHP4 5.0 7.4 1.0

Chlorine binding site 2 out of 2 in 7ltb

Go back to Chlorine Binding Sites List in 7ltb
Chlorine binding site 2 out of 2 in the Crystal Structure of Keratinicyclin B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Keratinicyclin B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl6

b:9.7
occ:0.82
CL B:OMY6 0.0 9.7 0.8
CE1 B:OMY6 1.7 8.1 1.0
HO6 J:BGC1 2.2 19.4 1.0
CZ B:OMY6 2.7 7.7 1.0
CD1 B:OMY6 2.7 8.0 1.0
HD1 B:OMY6 2.8 9.6 1.0
H62 F:BGC1 2.9 14.2 0.3
OCZ B:OMY6 3.0 8.0 1.0
H61 F:BGC1 3.0 14.2 0.8
O6 J:BGC1 3.1 16.2 0.7
H62 J:BGC1 3.4 18.2 1.0
C5 B:GHP4 3.5 7.5 1.0
O B:HOH212 3.5 29.2 1.0
O5 J:BGC1 3.6 11.9 1.0
C6 J:BGC1 3.7 15.1 1.0
H6 B:GHP4 3.9 8.6 1.0
C6 B:GHP4 3.9 7.2 1.0
CE2 B:OMY6 4.0 7.8 1.0
CG B:OMY6 4.0 7.9 1.0
C6 F:BGC1 4.0 11.8 1.0
H62 F:BGC1 4.0 14.2 0.8
C5 J:BGC1 4.3 13.2 1.0
C4 B:GHP4 4.3 7.9 1.0
HO6 F:BGC1 4.4 14.4 0.3
O6 F:BGC1 4.5 12.1 0.3
H61 F:BGC1 4.5 14.2 0.3
CD2 B:OMY6 4.5 7.9 1.0
H5 F:BGC1 4.5 12.3 1.0
O4 B:GHP4 4.6 8.6 1.0
O B:HOH220 4.6 10.4 0.4
C1 J:BGC1 4.6 10.1 1.0
H5 J:BGC1 4.7 15.8 1.0
H61 J:BGC1 4.7 18.2 1.0
HA B:GHP5 4.7 8.9 1.0
O6 F:BGC1 4.8 12.4 0.8
HE2 B:OMY6 4.8 9.3 1.0
C5 F:BGC1 4.9 10.2 1.0
HA B:OMY6 5.0 9.1 1.0
H1 J:BGC1 5.0 12.1 1.0

Reference:

K.L.Mcwhorter, V.T.Chioti, F.Xu, P.D.Jeffrey, K.M.Davis, M.R.Seyedsayamdost. Structural and Functional Analysis of Keratinicyclin Reveals Synergistic Antibiosis with Vancomycin Against Clostridium Difficile To Be Published.
Page generated: Sun Jul 13 03:51:33 2025

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