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Chlorine in PDB 8dte: Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae

Protein crystallography data

The structure of Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae, PDB code: 8dte was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.97 / 2.20
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 51.76, 51.76, 167.57, 90, 90, 90
R / Rfree (%) 20 / 23.7

Other elements in 8dte:

The structure of Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae (pdb code 8dte). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae, PDB code: 8dte:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8dte

Go back to Chlorine Binding Sites List in 8dte
Chlorine binding site 1 out of 2 in the Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:50.5
occ:1.00
O A:HOH342 3.0 33.2 1.0
N A:PHE64 3.1 33.3 1.0
NH2 A:ARG154 3.2 46.8 1.0
O A:PHE62 3.6 35.2 1.0
CB A:PHE64 3.9 31.1 1.0
CA A:ASP63 3.9 33.8 1.0
CA A:PHE64 4.0 35.6 1.0
C A:ASP63 4.0 35.3 1.0
CD2 A:PHE64 4.0 36.0 1.0
N A:GLN65 4.2 33.8 1.0
O A:HOH364 4.2 57.0 1.0
OD1 A:ASP63 4.3 32.3 1.0
CG A:PHE64 4.4 35.9 1.0
O A:HOH332 4.4 43.7 1.0
CZ A:ARG154 4.5 48.0 1.0
C A:PHE62 4.5 37.8 1.0
C A:PHE64 4.5 33.7 1.0
CG A:GLN65 4.7 46.4 1.0
N A:ASP63 4.7 36.0 1.0
CG A:ASP63 4.9 36.0 1.0
OE1 A:GLN92 4.9 44.0 1.0
CB A:ASP63 5.0 36.8 1.0
NH1 A:ARG154 5.0 51.9 1.0

Chlorine binding site 2 out of 2 in 8dte

Go back to Chlorine Binding Sites List in 8dte
Chlorine binding site 2 out of 2 in the Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:39.0
occ:1.00
OG A:SER80 2.9 40.2 1.0
CG A:GLN83 3.8 35.5 1.0
CB A:SER80 3.9 37.6 1.0
CD A:GLN83 4.1 37.1 1.0
CB A:ALA82 4.1 37.7 1.0
O A:HOH312 4.2 41.3 1.0
NE2 A:GLN83 4.4 39.0 1.0
OE1 A:GLN83 4.5 37.0 1.0
N A:GLN83 4.5 33.4 1.0
O A:HOH334 4.8 39.0 1.0
CB A:GLN83 4.9 33.1 1.0
O A:HOH362 5.0 46.1 1.0
C A:ALA82 5.0 33.6 1.0

Reference:

N.D.Debouver, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Toluene Tolerance Periplasmic Transport Protein From Neisseria Gonorrhoeae To Be Published.
Page generated: Sun Jul 13 10:53:53 2025

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