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Chlorine in PDB 8fps: GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K)

Chlorine Binding Sites:

The binding sites of Chlorine atom in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K) (pdb code 8fps). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K), PDB code: 8fps:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8fps

Go back to Chlorine Binding Sites List in 8fps
Chlorine binding site 1 out of 4 in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl401

b:76.1
occ:1.00
 N E:TRP64 2.9 47.4 1.0
N E:ARG65 3.1 60.2 1.0
CD1 E:TRP64 3.2 47.1 1.0
CB E:ASP31 3.4 54.8 1.0
N E:LEU63 3.4 35.6 1.0
CB E:TRP64 3.5 47.0 1.0
CA E:TRP64 3.5 48.5 1.0
CG E:TRP64 3.7 50.4 1.0
C E:TRP64 3.8 50.7 1.0
CA E:ASP31 3.8 55.5 1.0
CA E:GLY62 3.8 37.3 1.0
C E:GLY62 3.8 34.1 1.0
O E:THR30 3.9 47.0 1.0
C E:LEU63 3.9 38.7 1.0
CA E:ARG65 4.1 60.7 1.0
CB E:ARG65 4.1 62.3 1.0
CA E:LEU63 4.1 38.9 1.0
O E:ARG65 4.2 65.6 1.0
CG E:ARG65 4.2 64.4 1.0
C E:THR30 4.3 43.6 1.0
N E:GLY62 4.3 40.4 1.0
NE1 E:TRP64 4.4 46.6 1.0
N E:ASP31 4.4 52.4 1.0
O E:GLY29 4.4 42.9 1.0
CG E:ASP31 4.4 56.8 1.0
OD2 E:ASP31 4.6 56.6 1.0
CB E:LEU63 4.6 37.6 1.0
C E:ARG65 4.7 63.5 1.0
O E:GLY62 4.7 42.5 1.0
O E:TRP64 5.0 53.3 1.0
CD2 E:TRP64 5.0 49.1 1.0

Chlorine binding site 2 out of 4 in 8fps

Go back to Chlorine Binding Sites List in 8fps
Chlorine binding site 2 out of 4 in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl401

b:76.2
occ:1.00
 N G:TRP64 2.9 47.6 1.0
N G:ARG65 3.1 59.2 1.0
CD1 G:TRP64 3.2 47.5 1.0
CB G:ASP31 3.4 55.4 1.0
N G:LEU63 3.4 35.4 1.0
CA G:TRP64 3.5 48.4 1.0
CB G:TRP64 3.5 46.9 1.0
CG G:TRP64 3.7 50.1 1.0
C G:TRP64 3.7 50.5 1.0
CA G:GLY62 3.8 36.6 1.0
CA G:ASP31 3.8 56.6 1.0
C G:GLY62 3.8 34.4 1.0
O G:THR30 3.9 48.8 1.0
C G:LEU63 3.9 38.8 1.0
CA G:ARG65 4.1 59.6 1.0
CB G:ARG65 4.1 61.0 1.0
CA G:LEU63 4.1 38.4 1.0
O G:ARG65 4.2 65.9 1.0
CG G:ARG65 4.2 63.5 1.0
C G:THR30 4.3 44.1 1.0
N G:GLY62 4.4 39.0 1.0
O G:GLY29 4.4 43.4 1.0
NE1 G:TRP64 4.4 46.5 1.0
N G:ASP31 4.4 53.1 1.0
CG G:ASP31 4.4 57.5 1.0
OD2 G:ASP31 4.6 57.9 1.0
CB G:LEU63 4.6 38.2 1.0
C G:ARG65 4.6 63.1 1.0
O G:GLY62 4.7 42.7 1.0
O G:TRP64 5.0 53.5 1.0

Chlorine binding site 3 out of 4 in 8fps

Go back to Chlorine Binding Sites List in 8fps
Chlorine binding site 3 out of 4 in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl401

b:81.4
occ:1.00
 N F:TRP64 2.8 46.9 1.0
N F:ARG65 3.0 52.2 1.0
N F:LEU63 3.2 34.7 1.0
CB F:ASP31 3.4 54.6 1.0
O F:HOH501 3.5 36.4 1.0
CA F:TRP64 3.5 47.0 1.0
CD1 F:TRP64 3.5 46.9 1.0
CA F:GLY62 3.6 37.6 1.0
CG F:ARG65 3.6 54.9 1.0
O F:ARG65 3.6 53.1 1.0
C F:GLY62 3.7 35.6 1.0
CB F:TRP64 3.7 47.3 1.0
C F:TRP64 3.7 47.9 1.0
C F:LEU63 3.8 40.5 1.0
CA F:ASP31 3.9 52.7 1.0
N F:GLY62 3.9 42.2 1.0
CG F:TRP64 3.9 47.5 1.0
CA F:ARG65 4.0 54.4 1.0
CA F:LEU63 4.0 36.8 1.0
O F:THR30 4.1 49.1 1.0
NH1 F:ARG65 4.1 58.2 1.0
C F:ARG65 4.3 54.2 1.0
CB F:ARG65 4.3 55.9 1.0
CZ F:ARG65 4.5 59.7 1.0
CD F:ARG65 4.5 54.0 1.0
CG F:ASP31 4.5 58.3 1.0
N F:ASP31 4.6 54.0 1.0
C F:THR30 4.6 48.4 1.0
NE F:ARG65 4.6 56.8 1.0
NE1 F:TRP64 4.7 45.0 1.0
O F:GLY62 4.7 44.1 1.0
OD2 F:ASP31 4.7 58.4 1.0
CB F:LEU63 4.7 37.5 1.0
O F:TRP64 4.9 53.3 1.0
O F:GLY29 5.0 40.1 1.0
O F:LEU63 5.0 42.9 1.0

Chlorine binding site 4 out of 4 in 8fps

Go back to Chlorine Binding Sites List in 8fps
Chlorine binding site 4 out of 4 in the GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of GLUA2 Flip Q Isoform N619K Mutant of Ampa Receptor in Complex with Gain-of-Function Tarp Gamma-2, with 10MM CACL2, 150MM Nacl, 1MM MGCL2, 330UM Ctz, and 100MM Glutamate (Open-Canamg/N619K) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl401

b:80.4
occ:1.00
 N H:TRP64 2.8 48.6 1.0
N H:ARG65 3.0 52.6 1.0
N H:LEU63 3.2 36.4 1.0
CB H:ASP31 3.4 53.9 1.0
O H:HOH501 3.5 36.2 1.0
CA H:TRP64 3.5 49.4 1.0
CD1 H:TRP64 3.5 48.5 1.0
CA H:GLY62 3.6 38.1 1.0
CG H:ARG65 3.6 55.1 1.0
O H:ARG65 3.7 53.0 1.0
C H:GLY62 3.7 36.6 1.0
CB H:TRP64 3.7 49.3 1.0
C H:TRP64 3.7 49.5 1.0
C H:LEU63 3.8 41.9 1.0
CA H:ASP31 3.9 52.4 1.0
N H:GLY62 3.9 42.1 1.0
CG H:TRP64 3.9 49.4 1.0
CA H:ARG65 4.0 54.6 1.0
CA H:LEU63 4.0 38.1 1.0
O H:THR30 4.0 49.0 1.0
NH1 H:ARG65 4.1 58.5 1.0
C H:ARG65 4.3 54.1 1.0
CB H:ARG65 4.3 55.9 1.0
CZ H:ARG65 4.5 60.5 1.0
CD H:ARG65 4.5 54.0 1.0
CG H:ASP31 4.5 57.9 1.0
N H:ASP31 4.6 53.9 1.0
C H:THR30 4.6 47.5 1.0
NE H:ARG65 4.6 57.0 1.0
NE1 H:TRP64 4.7 46.2 1.0
O H:GLY62 4.7 44.9 1.0
OD2 H:ASP31 4.7 58.2 1.0
CB H:LEU63 4.7 38.2 1.0
O H:TRP64 4.9 54.1 1.0
O H:GLY29 4.9 39.6 1.0
O H:LEU63 5.0 43.4 1.0

Reference:

T.Nakagawa, X.Wang, F.J.Miguez-Cabello, D.Bowie. The Open Gate of the Ampa Receptor Forms A CA2+ Binding Site Critical in Regulating Ion Transport Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-024-01228-3
Page generated: Sun Jul 13 11:34:27 2025

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