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Chlorine in PDB 8rib: N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose

Protein crystallography data

The structure of N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose, PDB code: 8rib was solved by V.Napolitano, J.Janna Olmos, G.M.Popowicz, G.Dubin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.08 / 1.13
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 56.009, 45.742, 52.616, 90, 118.87, 90
R / Rfree (%) 12.6 / 16.2

Other elements in 8rib:

The structure of N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose also contains other interesting chemical elements:

Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose (pdb code 8rib). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose, PDB code: 8rib:

Chlorine binding site 1 out of 1 in 8rib

Go back to Chlorine Binding Sites List in 8rib
Chlorine binding site 1 out of 1 in the N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of N-Terminal Domain of Trypanosoma Brucei PEX14 in Complex with A Pyrazolo-Pyrazolo[4,3-C]Pyridin-3-Yl Compound Showing A Novel Binding Pose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl109

b:13.7
occ:1.00
H B:SER29 2.4 12.1 1.0
H A:THR57 2.4 12.5 1.0
HA A:LYS56 2.7 13.9 1.0
HB3 B:SER29 2.9 14.6 1.0
OG B:SER29 3.1 15.2 1.0
O A:HOH244 3.1 19.9 1.0
HG23 A:THR57 3.1 14.7 1.0
HB3 B:PRO27 3.2 13.4 1.0
HG B:SER29 3.2 30.0 0.0
N A:THR57 3.2 12.5 1.0
N B:SER29 3.3 11.8 1.0
HB B:THR28 3.3 13.2 1.0
HB2 A:GLU60 3.3 17.0 1.0
HG2 A:GLU60 3.4 20.5 1.0
CB B:SER29 3.4 14.1 1.0
HD3 A:LYS56 3.4 13.2 1.0
HB3 A:LYS56 3.5 13.4 1.0
CA A:LYS56 3.5 13.4 1.0
H B:THR28 3.7 11.1 1.0
HB3 A:GLU60 3.7 16.3 1.0
HB2 B:PRO27 3.7 12.7 1.0
HD2 A:LYS56 3.7 12.9 1.0
CB A:GLU60 3.8 16.4 1.0
CB B:PRO27 3.9 13.1 1.0
C A:LYS56 3.9 13.6 1.0
N B:THR28 3.9 10.9 1.0
CA B:SER29 3.9 13.6 1.0
CB A:LYS56 4.0 13.2 1.0
OG1 A:THR57 4.0 14.7 1.0
CD A:LYS56 4.0 12.2 1.0
CG A:GLU60 4.0 20.3 1.0
CG2 A:THR57 4.1 15.2 1.0
O A:HOH224 4.1 33.9 1.0
CB B:THR28 4.2 12.5 1.0
C B:THR28 4.3 11.3 1.0
HB2 B:SER29 4.3 14.7 1.0
HG1 A:THR57 4.3 30.0 0.0
CA B:THR28 4.3 11.6 1.0
CB A:THR57 4.3 14.4 1.0
CA A:THR57 4.4 12.7 1.0
C B:PRO27 4.4 10.5 1.0
HA B:SER29 4.4 13.3 1.0
O A:PRO55 4.5 12.5 1.0
HG22 A:THR57 4.5 16.1 1.0
H B:SER30 4.6 12.1 1.0
CD A:GLU60 4.6 30.8 1.0
CG A:LYS56 4.6 12.5 1.0
CA B:PRO27 4.6 11.3 1.0
HG21 A:THR57 4.7 15.7 1.0
OE2 A:GLU60 4.7 36.9 1.0
N A:LYS56 4.7 12.7 1.0
HA B:PRO27 4.7 11.6 1.0
HB2 A:LYS56 4.8 13.0 1.0
HG3 A:GLU60 4.8 20.0 1.0
OG1 B:THR28 4.9 13.1 1.0
O B:HOH221 5.0 24.1 1.0
O A:THR57 5.0 13.3 1.0

Reference:

F.Menezes, V.Napolitano, T.Frohlich, S.Rioton, J.D.Janna Olmos, G.Dubin, G.M.Popowicz. Quantum Chemistry in A Pocket To Be Published.
Page generated: Sun Feb 9 06:45:13 2025

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