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Chlorine in PDB 9dfn: X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam

Protein crystallography data

The structure of X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam, PDB code: 9dfn was solved by J.C.Lachowicz, T.G.Grove, J.B.Bonanno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.71 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.808, 57.838, 157.692, 90, 90, 90
R / Rfree (%) 16.9 / 19.7

Other elements in 9dfn:

The structure of X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam (pdb code 9dfn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam, PDB code: 9dfn:

Chlorine binding site 1 out of 1 in 9dfn

Go back to Chlorine Binding Sites List in 9dfn
Chlorine binding site 1 out of 1 in the X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of the Second Viperin-Like Enzyme From Trichoderma Virens with Bound Ctp and Sam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.6
occ:1.00
O A:HOH768 3.1 29.4 1.0
NH2 A:ARG170 3.3 18.4 1.0
N A:PHE176 3.3 15.1 1.0
O A:HOH553 3.4 31.6 1.0
NE A:ARG170 3.6 21.9 1.0
CA A:LYS175 3.9 17.8 1.0
CZ A:ARG170 3.9 20.4 1.0
CB A:PHE201 4.0 15.7 1.0
O A:PHE176 4.0 14.4 1.0
N A:PHE201 4.0 13.3 1.0
C A:LYS175 4.1 16.4 1.0
CA A:PHE176 4.2 14.7 1.0
CB A:PHE176 4.2 14.1 1.0
CD1 A:PHE201 4.3 16.6 1.0
CB A:LYS175 4.5 18.3 1.0
O A:GLN199 4.5 14.7 1.0
CA A:PHE201 4.5 14.4 1.0
CG A:PHE201 4.6 15.5 1.0
C A:PHE176 4.6 14.3 1.0
O A:ILE174 4.7 19.9 1.0
CD A:ARG170 4.7 23.3 1.0
C A:PRO200 4.8 13.1 1.0
CG A:LYS175 4.9 21.9 1.0

Reference:

J.C.Lachowicz, S.Grudman, J.B.Bonanno, A.Fiser, T.L.Grove. Structural Insights From Active Site Variants and B-8 Loop Interactions in Viperin-Like Enzymes To Be Published.
Page generated: Sun Jul 13 16:17:35 2025

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