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Chlorine in PDB 9fm0: Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex

Protein crystallography data

The structure of Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex, PDB code: 9fm0 was solved by J.M.Desveaux, C.Contreras Martel, A.Dessen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.21 / 2.56
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 87.582, 92.308, 105.22, 90, 104.83, 90
R / Rfree (%) 21 / 23.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex (pdb code 9fm0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex, PDB code: 9fm0:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9fm0

Go back to Chlorine Binding Sites List in 9fm0
Chlorine binding site 1 out of 4 in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:53.1
occ:1.00
N A:THR28 3.3 39.6 1.0
OH A:TYR32 3.4 49.2 1.0
ND2 E:ASN234 3.7 68.0 1.0
OG1 A:THR28 3.8 39.6 1.0
CA A:PHE27 3.9 39.7 1.0
CB A:PHE27 3.9 39.8 1.0
CE1 A:TYR32 4.0 45.5 1.0
CB A:THR28 4.0 40.2 1.0
C A:PHE27 4.1 39.0 1.0
CZ A:TYR32 4.1 44.3 1.0
CA A:THR28 4.2 39.2 1.0
CG E:ASN234 4.6 66.3 1.0
CB E:ASN234 4.7 65.5 1.0
O A:HOH487 5.0 41.6 1.0

Chlorine binding site 2 out of 4 in 9fm0

Go back to Chlorine Binding Sites List in 9fm0
Chlorine binding site 2 out of 4 in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:50.4
occ:1.00
N B:THR28 3.3 38.1 1.0
OH B:TYR32 3.6 38.9 1.0
OG1 B:THR28 3.7 39.1 1.0
CB B:THR28 3.9 39.0 1.0
ND2 F:ASN234 3.9 63.5 1.0
CE1 B:TYR32 4.0 36.3 1.0
CA B:PHE27 4.0 39.2 1.0
CB B:PHE27 4.1 38.7 1.0
C B:PHE27 4.2 38.7 1.0
CA B:THR28 4.2 37.8 1.0
CZ B:TYR32 4.3 35.1 1.0
CG F:ASN234 4.6 66.0 1.0
CB F:ASN234 4.7 66.4 1.0

Chlorine binding site 3 out of 4 in 9fm0

Go back to Chlorine Binding Sites List in 9fm0
Chlorine binding site 3 out of 4 in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:65.2
occ:1.00
OG1 C:THR109 3.2 42.8 1.0
N C:THR109 3.3 39.4 1.0
CB C:ARG108 3.5 41.8 1.0
CG2 C:THR109 3.7 42.4 1.0
CA C:ARG108 3.8 40.8 1.0
CB C:THR109 3.9 42.7 1.0
C C:ARG108 4.1 39.2 1.0
CA C:THR109 4.2 41.0 1.0
NE C:ARG108 4.4 44.1 1.0
CZ C:ARG108 4.4 45.8 1.0
NH2 C:ARG108 4.5 47.5 1.0
CG C:ARG108 4.7 42.2 1.0
CD C:ARG108 4.8 43.1 1.0
NH1 C:ARG108 4.9 45.8 1.0

Chlorine binding site 4 out of 4 in 9fm0

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Chlorine binding site 4 out of 4 in the Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Human Antibody (Fab) and P. Aeruginosa (T3SS) Protein Pcrv-Fragment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:65.1
occ:1.00
OG1 D:THR109 3.1 47.9 1.0
N D:THR109 3.3 44.5 1.0
CB D:ARG108 3.6 45.0 1.0
CG2 D:THR109 3.6 47.5 1.0
CB D:THR109 3.8 47.4 1.0
CA D:ARG108 3.8 44.5 1.0
C D:ARG108 4.1 43.9 1.0
CA D:THR109 4.2 45.5 1.0
NE D:ARG108 4.4 46.1 1.0
CZ D:ARG108 4.4 47.9 1.0
NH2 D:ARG108 4.5 49.3 1.0
CG D:ARG108 4.8 44.3 1.0
CD D:ARG108 4.8 45.0 1.0
NH1 D:ARG108 4.9 49.4 1.0

Reference:

J.M.Desveaux, E.Faudry, C.Contreras-Martel, F.Cretin, S.Dergan-Dylon, A.Amen, I.Bally, V.Tardivy-Casemajor, F.Chenavier, Y.Caspar, I.Attree, A.Dessen, P.Poignard. Human Antibodies That Target the Type III Secretion System of Pseudomonas Aeruginosa Inhibit Translocon Function and Cytotoxicity To Be Published.
Page generated: Sun Jul 13 16:48:53 2025

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