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Chlorine in PDB 9h7z: Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions

Enzymatic activity of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions

All present enzymatic activity of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions:
1.1.3.4;

Protein crystallography data

The structure of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions, PDB code: 9h7z was solved by J.A.Bauer, V.Bauerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.95 / 1.71
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 85.219, 82.251, 103.3, 90, 106.27, 90
R / Rfree (%) 17.7 / 19.9

Other elements in 9h7z:

The structure of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions also contains other interesting chemical elements:

Barium (Ba) 12 atoms
Sodium (Na) 6 atoms
Bromine (Br) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions (pdb code 9h7z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions, PDB code: 9h7z:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 9h7z

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Chlorine binding site 1 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:41.8
occ:0.74
 H A:PHE160 2.2 42.8 1.0
O A:HOH919 2.7 42.4 1.0
HA A:TYR159 3.0 43.4 1.0
N A:PHE160 3.1 35.6 1.0
HB3 A:PHE160 3.3 43.6 1.0
O A:PHE160 3.5 36.3 1.0
HD1 A:TYR159 3.5 47.0 1.0
HG12 A:ILE154 3.6 48.0 1.0
CD1 A:TYR159 3.8 39.1 1.0
CA A:TYR159 3.8 36.1 1.0
HD11 A:ILE154 3.8 47.7 1.0
CA A:PHE160 3.9 35.6 1.0
C A:TYR159 3.9 34.8 1.0
HG2 A:PRO149 3.9 44.1 1.0
HD13 A:ILE154 3.9 47.7 1.0
CB A:PHE160 4.0 36.2 1.0
C A:PHE160 4.1 37.2 1.0
CD1 A:ILE154 4.2 39.6 1.0
CE1 A:TYR159 4.2 40.7 1.0
HG3 A:PRO149 4.3 44.1 1.0
HB2 A:PHE160 4.3 43.6 1.0
HE1 A:TYR159 4.3 48.9 1.0
CG1 A:ILE154 4.3 40.0 1.0
CG A:TYR159 4.3 37.7 1.0
CG A:PRO149 4.5 36.7 1.0
O A:HIS158 4.5 35.7 1.0
HD2 A:PRO149 4.5 44.8 1.0
CB A:TYR159 4.6 36.6 1.0
HA A:PHE160 4.8 42.8 1.0
HG13 A:ILE154 4.8 48.0 1.0
N A:TYR159 4.8 33.9 1.0
HB2 A:TYR159 4.8 44.1 1.0
HG21 A:ILE154 4.9 48.4 1.0

Chlorine binding site 2 out of 10 in 9h7z

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Chlorine binding site 2 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl608

b:52.4
occ:0.85
 HA A:ARG239 3.1 44.7 1.0
HB2 A:GLN238 3.3 50.4 1.0
HG2 A:ARG239 3.4 42.4 1.0
HG3 A:ARG239 3.7 42.4 1.0
N A:ARG239 3.7 36.1 1.0
CA A:ARG239 3.8 37.2 1.0
C A:GLN238 3.9 38.5 1.0
CG A:ARG239 3.9 35.2 1.0
O A:GLN238 4.0 35.5 1.0
H A:ARG239 4.0 43.4 1.0
CB A:GLN238 4.2 41.9 1.0
HD3 A:PRO240 4.2 46.6 1.0
HD2 A:PRO240 4.3 46.6 1.0
HB3 A:GLN238 4.3 50.4 1.0
CB A:ARG239 4.4 35.6 1.0
CA A:GLN238 4.6 37.0 1.0
CD A:PRO240 4.7 38.7 1.0
OE1 A:GLN238 4.8 42.8 1.0
O A:HOH810 4.9 37.9 1.0
HB3 A:ARG239 4.9 42.8 1.0
HE A:ARG239 4.9 41.3 1.0

Chlorine binding site 3 out of 10 in 9h7z

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Chlorine binding site 3 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl609

b:41.0
occ:0.74
 H A:ILE61 2.4 36.3 1.0
HD2 A:PRO60 2.6 41.2 1.0
HG22 A:ILE61 2.9 35.8 1.0
HB A:ILE61 2.9 36.8 1.0
HA3 A:GLY59 3.2 38.6 1.0
N A:ILE61 3.2 30.2 1.0
CD A:PRO60 3.4 34.3 1.0
N A:PRO60 3.4 30.7 1.0
CG2 A:ILE61 3.5 29.7 1.0
HG21 A:ILE61 3.5 35.8 1.0
CB A:ILE61 3.6 30.6 1.0
C A:GLY59 3.6 31.2 1.0
HG2 A:ARG58 3.8 41.4 1.0
CA A:GLY59 3.8 32.1 1.0
HB2 A:PRO60 4.0 39.9 1.0
HD3 A:PRO60 4.0 41.2 1.0
CA A:ILE61 4.0 30.3 1.0
C A:PRO60 4.2 31.2 1.0
CA A:PRO60 4.2 31.5 1.0
O A:ARG58 4.2 35.6 1.0
O A:GLY59 4.3 31.6 1.0
CG A:PRO60 4.4 33.8 1.0
HG23 A:ILE61 4.4 35.8 1.0
CB A:PRO60 4.4 33.2 1.0
HG2 A:PRO60 4.5 40.6 1.0
N A:GLY59 4.6 34.2 1.0
H A:ILE62 4.6 32.6 1.0
HA A:ILE61 4.6 36.5 1.0
HA2 A:GLY59 4.6 38.6 1.0
O M:HOH888 4.6 40.4 1.0
C A:ARG58 4.7 35.5 1.0
CG A:ARG58 4.7 34.4 1.0
OD1 M:ASP440 4.8 38.9 1.0
HD12 A:ILE61 4.9 37.8 1.0
CG1 A:ILE61 4.9 29.9 1.0
HG3 A:ARG58 5.0 41.4 1.0
HD3 A:ARG58 5.0 38.5 1.0

Chlorine binding site 4 out of 10 in 9h7z

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Chlorine binding site 4 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl610

b:45.0
occ:0.88
 HE21 A:GLN142 2.6 64.6 1.0
O A:HOH818 3.0 34.9 1.0
HD3 A:ARG37 3.0 52.8 1.0
HH2 A:TRP232 3.4 36.6 1.0
HD21 A:LEU569 3.4 39.8 1.0
HG2 A:GLN142 3.5 51.2 1.0
HD22 A:LEU569 3.5 39.8 1.0
NE2 A:GLN142 3.5 53.8 1.0
HD13 A:LEU569 3.7 40.7 1.0
HD11 A:LEU569 3.8 40.7 1.0
HZ3 A:TRP232 3.9 36.6 1.0
CD A:ARG37 3.9 43.9 1.0
CD2 A:LEU569 3.9 33.1 1.0
HE22 A:GLN142 4.0 64.6 1.0
HD2 A:ARG37 4.1 52.8 1.0
CG A:GLN142 4.2 42.6 1.0
CH2 A:TRP232 4.2 30.4 1.0
CD1 A:LEU569 4.2 33.8 1.0
HG3 A:GLN142 4.2 51.2 1.0
HG1 A:THR170 4.2 37.6 1.0
CD A:GLN142 4.3 51.5 1.0
NE A:ARG37 4.4 43.6 1.0
CZ3 A:TRP232 4.4 30.4 1.0
HE A:ARG37 4.4 52.5 1.0
HA A:ALA143 4.7 39.4 1.0
CG A:LEU569 4.7 31.4 1.0
HD23 A:LEU569 4.7 39.8 1.0
OG1 A:THR170 4.7 31.2 1.0
O A:GLN142 4.8 36.2 1.0
HG2 A:ARG37 4.9 45.0 1.0
OE2 A:GLU40 5.0 42.5 1.0
CG A:ARG37 5.0 37.4 1.0

Chlorine binding site 5 out of 10 in 9h7z

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Chlorine binding site 5 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl611

b:55.9
occ:0.86
 HE1 A:HIS277 3.1 57.4 0.6
HG2 A:PRO12 3.1 50.2 1.0
NE2 A:HIS277 3.2 48.8 0.4
NE2 A:HIS277 3.2 49.0 0.6
HD21 A:ASN275 3.3 55.0 1.0
HD2 A:PRO12 3.3 49.5 1.0
CE1 A:HIS277 3.5 47.8 0.6
HB2 A:PRO12 3.5 51.7 1.0
HE1 A:HIS277 3.7 59.5 0.4
CE1 A:HIS277 3.8 49.5 0.4
CG A:PRO12 3.8 41.7 1.0
CD A:PRO12 4.0 41.1 1.0
ND2 A:ASN275 4.1 45.7 1.0
HG3 A:LYS13 4.1 60.8 1.0
HE3 A:LYS13 4.1 77.9 1.0
CB A:PRO12 4.1 43.0 1.0
OD1 A:ASN275 4.2 46.0 1.0
CD2 A:HIS277 4.3 46.8 0.4
O A:HOH920 4.4 39.4 1.0
CD2 A:HIS277 4.5 47.8 0.6
HD2 A:HIS277 4.5 56.2 0.4
CG A:ASN275 4.6 46.1 1.0
HG2 A:LYS13 4.6 60.8 1.0
HD3 A:PRO12 4.6 49.5 1.0
HG3 A:PRO12 4.7 50.2 1.0
ND1 A:HIS277 4.7 46.4 0.6
HD22 A:ASN275 4.7 55.0 1.0
H A:LYS13 4.7 52.1 1.0
HB3 A:PRO12 4.7 51.7 1.0
HG1 M:THR10 4.8 48.4 1.0
HE2 A:LYS13 4.8 77.9 1.0
CG A:LYS13 4.8 50.6 1.0
OD1 A:ASP11 4.8 44.6 1.0
CE A:LYS13 4.9 64.8 1.0
HD2 A:HIS277 4.9 57.5 0.6
N A:PRO12 5.0 40.9 1.0
ND1 A:HIS277 5.0 48.2 0.4

Chlorine binding site 6 out of 10 in 9h7z

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Chlorine binding site 6 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl612

b:53.4
occ:0.76
 HE1 A:HIS510 2.5 38.3 1.0
O A:HOH1009 2.6 45.9 1.0
HA A:TYR506 3.1 37.0 1.0
CE1 A:HIS510 3.4 31.8 1.0
HD2 A:TYR506 3.5 37.4 1.0
HB2 A:TYR509 3.8 36.6 1.0
HD1 A:HIS510 4.0 36.9 1.0
CA A:TYR506 4.0 30.8 1.0
ND1 A:HIS510 4.1 30.7 1.0
CD2 A:TYR506 4.2 31.1 1.0
HD2 A:TYR509 4.2 37.6 1.0
HB2 A:TYR506 4.3 37.8 1.0
O A:GLU505 4.4 32.6 1.0
NE2 A:HIS510 4.4 30.8 1.0
O A:TYR506 4.5 28.0 1.0
CB A:TYR506 4.5 31.4 1.0
HE2 A:HIS510 4.6 37.0 1.0
CB A:TYR509 4.6 30.4 1.0
CD2 A:TYR509 4.7 31.3 1.0
CG A:TYR506 4.7 29.6 1.0
C A:TYR506 4.8 29.9 1.0
HB3 A:TYR509 4.8 36.6 1.0
N A:TYR506 4.8 30.8 1.0
O A:HOH739 4.9 36.0 1.0
C A:GLU505 4.9 34.5 1.0
CG A:TYR509 5.0 30.5 1.0

Chlorine binding site 7 out of 10 in 9h7z

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Chlorine binding site 7 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl613

b:50.6
occ:0.83
 HB2 A:ASN278 2.9 45.0 1.0
HH A:TYR280 2.9 49.4 1.0
HA2 A:GLY17 3.0 46.8 1.0
HE2 A:TYR280 3.1 45.7 1.0
O A:HOH826 3.1 36.4 1.0
HD22 A:ASN278 3.6 45.9 1.0
CA A:GLY17 3.7 38.9 1.0
OH A:TYR280 3.7 41.0 1.0
HA3 A:GLY17 3.8 46.8 1.0
CB A:ASN278 3.8 37.4 1.0
H A:GLY17 3.9 45.2 1.0
CE2 A:TYR280 3.9 38.0 1.0
HB3 A:ASN278 4.1 45.0 1.0
N A:GLY17 4.1 37.6 1.0
H A:ASN278 4.2 41.9 1.0
ND2 A:ASN278 4.2 38.1 1.0
CZ A:TYR280 4.3 39.3 1.0
O A:ASN278 4.3 36.2 1.0
CG A:ASN278 4.5 36.2 1.0
HG A:SER16 4.5 55.2 1.0
CA A:ASN278 4.7 36.6 1.0
C A:ASN278 4.8 35.5 1.0
N A:ASN278 4.8 34.9 1.0
OG A:SER16 4.8 45.9 1.0
HD21 A:ASN278 4.9 45.9 1.0
C A:GLY17 5.0 37.6 1.0

Chlorine binding site 8 out of 10 in 9h7z

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Chlorine binding site 8 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl607

b:36.5
occ:0.67
 H M:ILE61 2.3 35.4 1.0
HD2 M:PRO60 2.6 41.3 1.0
HB M:ILE61 2.9 35.9 1.0
HG22 M:ILE61 3.1 35.1 1.0
N M:ILE61 3.1 29.4 1.0
HA3 M:GLY59 3.2 37.7 1.0
CD M:PRO60 3.3 34.3 1.0
N M:PRO60 3.3 30.6 1.0
CB M:ILE61 3.6 29.8 1.0
CG2 M:ILE61 3.6 29.2 1.0
HG21 M:ILE61 3.6 35.1 1.0
C M:GLY59 3.6 31.6 1.0
HB2 M:PRO60 3.8 37.9 1.0
CA M:GLY59 3.9 31.3 1.0
HG2 M:ARG58 3.9 39.4 1.0
CA M:ILE61 4.0 29.6 1.0
HD3 M:PRO60 4.0 41.3 1.0
C M:PRO60 4.0 30.3 1.0
CA M:PRO60 4.1 31.5 1.0
CB M:PRO60 4.2 31.5 1.0
O M:GLY59 4.3 30.2 1.0
CG M:PRO60 4.3 34.0 1.0
HG2 M:PRO60 4.4 40.9 1.0
O M:ARG58 4.4 31.6 1.0
HA M:ILE61 4.5 35.6 1.0
HG23 M:ILE61 4.5 35.1 1.0
H M:ILE62 4.6 34.9 1.0
N M:GLY59 4.6 31.8 1.0
HA2 M:GLY59 4.6 37.7 1.0
OD1 A:ASP440 4.7 37.0 1.0
C M:ARG58 4.8 32.0 1.0
O A:HOH750 4.9 35.8 1.0
CG M:ARG58 4.9 32.8 1.0
HA M:PRO60 5.0 37.9 1.0
HD12 M:ILE61 5.0 33.9 1.0
CG1 M:ILE61 5.0 28.5 1.0

Chlorine binding site 9 out of 10 in 9h7z

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Chlorine binding site 9 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl608

b:35.1
occ:1.00
 HH22 M:ARG230 2.4 45.4 1.0
HH12 M:ARG230 2.9 43.7 1.0
O M:HOH723 2.9 41.6 1.0
NH2 M:ARG230 3.3 37.7 1.0
O M:HOH729 3.4 41.7 1.0
HB3 M:ASP57 3.4 48.5 1.0
NH1 M:ARG230 3.7 36.3 1.0
HA M:ASP57 3.7 44.2 1.0
HH21 M:ARG230 3.9 45.4 1.0
CZ M:ARG230 3.9 36.6 1.0
HB2 M:ASP57 3.9 48.5 1.0
CB M:ASP57 4.0 40.4 1.0
CA M:ASP57 4.3 36.8 1.0
HH11 M:ARG230 4.4 43.7 1.0
HH M:TYR54 4.5 45.9 1.0
OE1 M:GLU63 4.7 35.5 1.0
O M:SER56 4.9 35.2 1.0
HD21 M:LEU234 5.0 46.6 1.0

Chlorine binding site 10 out of 10 in 9h7z

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Chlorine binding site 10 out of 10 in the Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl609

b:48.1
occ:0.69
 HB3 M:ARG512 3.4 31.5 1.0
HA M:PHE511 3.5 30.9 1.0
C M:PHE511 3.7 25.8 1.0
HG2 M:ARG512 3.7 33.1 1.0
O M:HOH779 3.8 27.9 1.0
N M:ARG512 3.9 24.5 1.0
CA M:PHE511 3.9 25.7 1.0
O M:PHE511 4.0 27.4 1.0
H M:ARG512 4.0 29.5 1.0
N M:PHE511 4.0 27.2 1.0
CB M:ARG512 4.1 26.2 1.0
HD3 M:ARG512 4.2 36.2 1.0
C M:HIS510 4.2 28.0 1.0
O M:HIS510 4.3 29.4 1.0
HA M:ALA332 4.3 30.1 1.0
CG M:ARG512 4.3 27.5 1.0
H M:PHE511 4.4 32.7 1.0
O M:THR331 4.5 26.4 1.0
CA M:ARG512 4.6 26.3 1.0
HA M:HIS510 4.6 31.7 1.0
CD M:ARG512 4.7 30.1 1.0
OG1 M:THR333 4.9 30.5 1.0
HA M:ARG512 4.9 31.7 1.0
HB2 M:ARG512 4.9 31.5 1.0
H M:THR333 5.0 31.5 1.0
HB M:THR333 5.0 33.4 1.0

Reference:

J.A.Bauer, V.Bauerova. Aspergillus Niger Glucose Oxidase Bound to BA2+ Ions To Be Published.
Page generated: Sat Dec 13 14:26:45 2025

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