Chlorine in PDB 9h8k: Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp

The structure of Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp, PDB code: 9h8k was solved by F.Friedrich, M.Kuge, M.Keppler, S.Gerhardt, O.Einsle, J.N.Andexer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.62 / 2.10
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	160.772, 160.772, 67.717, 90, 90, 120
R / Rfree (%)	19.3 / 21.7

The binding sites of Chlorine atom in the Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp (pdb code 9h8k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp, PDB code: 9h8k:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:39.2 occ:1.00 ND2 A:ASN88 3.4 32.4 1.0 CA A:ASN88 3.7 30.0 1.0 CB A:ASN88 3.8 28.6 1.0 O A:HOH489 3.9 36.1 1.0 CG A:ASN88 4.1 35.9 1.0 N A:ASN88 4.1 30.3 1.0 C A:TYR87 4.7 31.7 1.0 O A:TYR87 4.8 34.1 1.0 O A:HOH421 5.0 51.1 1.0 C A:ASN88 5.0 33.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Polyphosphate Kinase 2-II (PPK2-II) From Lysinibacillus Fusiformis Bound to Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:77.3 occ:1.00 ND2 A:ASN171 3.4 47.3 1.0 NZ A:LYS174 4.1 68.7 1.0 CE A:LYS174 4.4 71.2 1.0 CG A:ASN171 4.5 53.5 1.0 OD1 A:ASN171 4.8 45.6 1.0

M.Kuge, M.Keppler, F.Friedrich, R.Saleem-Batcha, J.Winter, I.Prucker, P.Germer, S.Gerhardt, O.Einsle, M.Jung, H.J.Jessen, J.N.Andexer. Structural Insights Into Broad-Range Polyphosphate Kinase 2‐II Enzymes Applicable For Pyrimidine Nucleoside Diphosphate Synthesis. Chembiochem 00970 2025.
ISSN: ESSN 1439-7633
PubMed: 39846220
DOI: 10.1002/CBIC.202400970