Atomistry » Chlorine » PDB 9h3e-9ji6 » 9hh2
Atomistry »
  Chlorine »
    PDB 9h3e-9ji6 »
      9hh2 »

Chlorine in PDB 9hh2: Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose

Protein crystallography data

The structure of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose, PDB code: 9hh2 was solved by A.Chevenier, M.Czjzek, G.Michel, E.Ficko-Blean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.63 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.63, 96.19, 106.65, 90, 90, 90
R / Rfree (%) 15.2 / 17.7

Other elements in 9hh2:

The structure of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Bromine (Br) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose (pdb code 9hh2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose, PDB code: 9hh2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 1 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:28.4
occ:1.00
 O B:HOH1121 2.6 24.4 0.4
NZ A:LYS329 3.1 19.7 1.0
ND2 B:ASN320 3.4 26.8 1.0
CZ2 A:TRP336 3.8 16.8 1.0
CE A:LYS329 3.9 20.6 1.0
CE1 B:PHE319 3.9 19.4 1.0
O B:HOH1121 3.9 25.0 0.6
CH2 A:TRP336 4.0 15.8 1.0
OD1 B:ASN320 4.1 20.6 1.0
CD A:LYS329 4.1 18.4 1.0
CG B:ASN320 4.2 20.5 1.0
O1 B:GOL609 4.5 27.0 1.0
CG2 B:THR331 4.6 16.9 1.0
CZ B:PHE319 4.6 18.9 1.0
O B:HOH1118 4.7 25.2 1.0
O2 B:GOL609 4.7 44.8 1.0
CE2 A:TRP336 4.8 16.2 1.0
CD1 B:PHE319 4.8 19.7 1.0

Chlorine binding site 2 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 2 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:28.2
occ:1.00
 O A:HOH1132 2.8 46.6 1.0
NZ B:LYS329 3.1 19.4 1.0
ND2 A:ASN320 3.3 27.1 1.0
O A:HOH1090 3.8 30.1 1.0
CZ2 B:TRP336 3.8 15.2 1.0
CE B:LYS329 3.9 20.0 1.0
CE1 A:PHE319 4.0 17.8 1.0
CH2 B:TRP336 4.1 17.4 1.0
OD1 A:ASN320 4.1 19.8 1.0
CG A:ASN320 4.2 19.4 1.0
O A:HOH1121 4.2 42.7 1.0
CD B:LYS329 4.2 18.6 1.0
O1 A:GOL613 4.3 30.2 1.0
O A:HOH712 4.4 19.2 0.6
CG2 A:THR331 4.6 17.9 1.0
CZ A:PHE319 4.7 19.5 1.0
CE2 B:TRP336 4.8 16.1 1.0
C3 A:GOL613 4.8 38.5 1.0
CD1 A:PHE319 4.9 17.1 1.0
O A:HOH712 4.9 19.1 0.4

Chlorine binding site 3 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 3 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:25.4
occ:1.00
 O A:HOH1003 3.0 30.4 1.0
N A:VAL501 3.5 20.0 1.0
N A:LYS503 3.5 19.4 1.0
N A:ASP502 3.6 20.0 1.0
CG A:LYS503 3.7 24.6 1.0
O A:HOH1129 3.8 42.5 1.0
CE A:LYS503 3.8 23.2 1.0
CB A:GLU500 4.0 20.0 1.0
CB A:LYS503 4.0 24.0 1.0
CA A:GLU500 4.0 19.7 1.0
C A:VAL501 4.2 20.2 1.0
C A:GLU500 4.3 18.7 1.0
CG A:GLU500 4.3 22.6 1.0
CA A:ASP502 4.3 20.2 1.0
CB A:ASP502 4.3 21.7 1.0
CD A:LYS503 4.3 22.7 1.0
C A:ASP502 4.4 21.1 1.0
CA A:LYS503 4.4 22.3 1.0
CA A:VAL501 4.4 20.5 1.0

Chlorine binding site 4 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 4 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl608

b:36.3
occ:1.00
 N A:LYS474 3.3 22.2 1.0
CA A:VAL473 3.8 19.8 1.0
CB A:VAL473 3.9 21.2 1.0
C A:VAL473 4.0 22.4 1.0
CB A:LYS474 4.1 30.7 1.0
CA A:LYS474 4.3 24.6 1.0
CG1 A:VAL473 4.4 26.4 1.0
O A:HOH802 4.6 30.9 1.0
O A:PHE472 5.0 26.7 1.0

Chlorine binding site 5 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 5 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl609

b:36.3
occ:1.00
 N A:ARG457 3.5 25.3 1.0
CB A:TYR454 3.6 23.6 1.0
CB A:ASP456 3.6 28.4 1.0
CA A:TYR454 3.7 25.4 1.0
O A:HOH1088 3.7 38.4 0.5
N A:ASP456 3.8 26.0 1.0
C A:TYR454 3.9 24.1 1.0
CD1 A:TYR454 4.0 34.2 1.0
O A:TYR454 4.1 24.7 1.0
CA A:ASP456 4.1 26.1 1.0
CB A:ARG457 4.1 25.8 1.0
C A:ASP456 4.2 27.0 1.0
O A:HOH817 4.3 45.2 1.0
CG A:TYR454 4.3 30.8 1.0
CA A:ARG457 4.4 26.8 1.0
N A:PRO455 4.4 25.9 1.0
CG A:ASP456 4.4 35.4 1.0
OD2 A:ASP456 4.6 43.0 1.0
CD A:PRO455 4.8 29.1 1.0
C A:PRO455 4.8 24.8 1.0

Chlorine binding site 6 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 6 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl610

b:33.9
occ:1.00
 ND2 A:ASN320 3.5 27.1 1.0
ND2 A:ASN318 3.5 18.6 1.0
NE2 A:HIS321 3.5 26.5 1.0
O A:HOH1100 3.7 28.5 1.0
O A:HOH1121 3.8 42.7 1.0
CD2 A:HIS321 3.9 23.0 1.0
OD1 A:ASN318 4.1 17.9 1.0
O B:HOH993 4.1 32.0 1.0
CB A:ASN320 4.1 18.3 1.0
CG A:ASN318 4.2 16.8 1.0
CG A:ASN320 4.3 19.4 1.0
NH1 B:ARG436 4.5 24.7 1.0
O B:HOH1087 4.5 29.7 0.5
O A:HOH1074 4.6 28.7 1.0
CE1 A:HIS321 4.7 27.7 1.0
NH2 B:ARG436 4.7 20.1 1.0
O B:LYS447 4.8 19.3 1.0
O A:HOH1132 4.8 46.6 1.0

Chlorine binding site 7 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 7 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl605

b:26.0
occ:1.00
 O B:HOH997 2.9 30.3 1.0
N B:LYS503 3.5 20.7 1.0
N B:VAL501 3.5 21.7 1.0
N B:ASP502 3.6 19.0 1.0
O B:HOH1140 3.6 39.2 1.0
CG B:LYS503 3.7 22.4 1.0
CE B:LYS503 3.9 25.5 1.0
CB B:LYS503 3.9 23.9 1.0
CB B:GLU500 4.0 21.1 1.0
CA B:GLU500 4.0 21.0 1.0
C B:VAL501 4.2 19.2 1.0
C B:GLU500 4.3 21.2 1.0
CA B:ASP502 4.3 23.9 1.0
CB B:ASP502 4.3 23.4 1.0
CG B:GLU500 4.3 23.2 1.0
CD B:LYS503 4.3 25.0 1.0
CA B:LYS503 4.4 22.6 1.0
C B:ASP502 4.4 19.9 1.0
CA B:VAL501 4.4 19.1 1.0
O B:HOH835 5.0 44.8 1.0

Chlorine binding site 8 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 8 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl606

b:30.3
occ:1.00
 O B:HOH1052 3.2 23.3 0.6
NH2 B:ARG457 3.5 27.4 1.0
O B:HOH799 3.5 42.3 1.0
NE B:ARG457 3.6 27.0 1.0
CZ B:ARG457 3.9 25.2 1.0
CD1 B:TYR454 4.0 33.4 1.0
CB B:ARG457 4.2 23.5 1.0
CB B:TYR454 4.7 24.0 1.0
CD B:ARG457 4.7 24.9 1.0
CG B:TYR454 4.7 29.7 1.0
CE1 B:TYR454 4.7 34.0 1.0
O B:HOH1052 4.9 25.2 0.4
CG B:ARG457 5.0 22.3 1.0
N B:ARG457 5.0 25.4 1.0

Chlorine binding site 9 out of 9 in 9hh2

Go back to Chlorine Binding Sites List in 9hh2
Chlorine binding site 9 out of 9 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl607

b:31.4
occ:1.00
 ND2 B:ASN320 3.4 26.8 1.0
ND2 B:ASN318 3.5 19.3 1.0
NE2 B:HIS321 3.6 27.6 1.0
O B:HOH1133 3.7 32.9 1.0
O A:HOH961 3.7 30.9 1.0
CD2 B:HIS321 3.9 23.0 1.0
CB B:ASN320 4.1 17.5 1.0
OD1 B:ASN318 4.1 18.1 1.0
CG B:ASN320 4.2 20.5 1.0
NH1 A:ARG436 4.2 26.6 1.0
CG B:ASN318 4.3 17.0 1.0
O A:LYS447 4.6 20.8 1.0
NH2 A:ARG436 4.6 21.0 1.0
O B:HOH1074 4.7 29.4 1.0
CE1 B:HIS321 4.7 28.7 1.0
O A:HOH987 4.7 40.0 1.0
CZ A:ARG436 4.9 22.9 1.0
O B:HOH1162 5.0 45.7 1.0

Reference:

A.Chevenier, M.Fanuel, E.Sokolova, D.Mico Latorre, D.Jouanneau, A.Jeudy, A.Prechoux, M.K.Zuhlke, J.Bartel, D.Becher, M.Czjzek, D.Ropartz, G.Michel, E.Ficko-Blean. Structure, Function and Catalytic Mechanism of the Carrageenan-Sulfatases From the Marine Bacterium Zobellia Galactanivorans Dsij T. Carbohydr Polym V. 358 23487 2025.
ISSN: ESSN 1879-1344
PubMed: 40383559
DOI: 10.1016/J.CARBPOL.2025.123487
Page generated: Sun Jul 13 17:00:23 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy