Chlorine in PDB 9hh3: Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans

The structure of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans, PDB code: 9hh3 was solved by A.Chevenier, M.Czjzek, G.Michel, E.Ficko-Blean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.36 / 2.26
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.8, 199.15, 75.35, 90, 99.33, 90
R / Rfree (%)	19.5 / 24.6

The structure of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans also contains other interesting chemical elements:

Bromine	(Br)	10 atoms
Calcium	(Ca)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Chlorine atom in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans (pdb code 9hh3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 25 binding sites of Chlorine where determined in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans, PDB code: 9hh3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl603 b:40.5 occ:1.00 O A:HOH808 3.2 36.8 1.0 CE A:LYS194 3.7 53.9 1.0 CG A:GLN190 3.7 38.2 1.0 CG A:PRO210 3.7 48.6 1.0 CD2 A:TYR193 3.8 44.8 1.0 CB A:GLN190 4.1 34.9 1.0 CA A:GLN190 4.2 41.2 1.0 CB A:PRO210 4.3 37.3 1.0 CG A:LYS194 4.3 47.5 1.0 O A:GLN190 4.4 42.0 1.0 CE2 A:TYR193 4.5 37.1 1.0 CG A:TYR193 4.6 39.8 1.0 CD A:LYS194 4.6 51.5 1.0 CB A:TYR193 4.7 40.3 1.0 CD A:GLN190 4.7 38.8 1.0 NZ A:LYS194 4.7 58.9 1.0 CD A:PRO210 4.8 46.3 1.0 C A:GLN190 4.8 43.4 1.0 CA A:PRO210 4.9 38.6 1.0 NE2 A:GLN190 5.0 37.9 1.0

Chlorine binding site 2 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:39.4 occ:1.00 O B:HOH880 3.0 49.0 1.0 NZ B:LYS329 3.2 43.7 1.0 ND2 A:ASN320 3.4 43.4 1.0 CE B:LYS329 3.9 37.4 1.0 CE1 A:PHE319 3.9 37.2 1.0 CZ2 B:TRP336 3.9 37.6 1.0 CH2 B:TRP336 4.2 43.0 1.0 CD B:LYS329 4.3 38.9 1.0 CG A:ASN320 4.3 38.9 1.0 OD1 A:ASN320 4.3 40.0 1.0 CZ A:PHE319 4.5 43.7 1.0 CG2 A:THR331 4.6 31.8 1.0 CE2 B:TRP336 4.8 41.0 1.0 O A:HOH782 4.8 50.8 1.0 CD1 A:PHE319 4.9 36.9 1.0

Chlorine binding site 3 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl605 b:49.4 occ:1.00 O A:HOH791 2.5 52.5 1.0 OE1 A:GLN196 2.6 58.5 1.0 NE2 A:GLN196 2.9 66.1 1.0 O A:HOH876 3.1 49.1 1.0 CD A:GLN196 3.1 61.5 1.0 N A:ARG205 3.2 42.8 1.0 CA A:ILE204 3.8 47.4 1.0 CG A:ARG205 3.8 51.0 1.0 CB A:ARG205 4.0 45.8 1.0 CG2 A:ILE204 4.0 39.8 1.0 C A:ILE204 4.0 45.5 1.0 CA A:ARG205 4.2 48.6 1.0 CG2 A:VAL208 4.3 35.3 1.0 O A:ASN203 4.4 51.5 1.0 CD A:ARG205 4.4 57.9 1.0 CB A:ILE204 4.4 41.9 1.0 CG A:GLN196 4.6 51.4 1.0 O A:ARG205 4.8 37.8 1.0 ND2 A:ASN201 4.8 43.8 1.0 CG2 A:THR192 4.9 42.1 1.0 N A:ILE204 4.9 47.2 1.0 CG1 A:ILE204 5.0 43.9 1.0

Chlorine binding site 4 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl606 b:42.9 occ:1.00 ND2 B:ASN320 3.2 42.5 1.0 NZ A:LYS329 3.2 42.4 1.0 O A:HOH884 3.2 47.3 1.0 CZ2 A:TRP336 3.9 42.9 1.0 CE A:LYS329 4.0 37.9 1.0 CE1 B:PHE319 4.0 37.1 1.0 CG B:ASN320 4.1 44.7 1.0 OD1 B:ASN320 4.1 42.3 1.0 CH2 A:TRP336 4.2 41.0 1.0 CD A:LYS329 4.4 39.4 1.0 CG2 B:THR331 4.6 36.4 1.0 CZ B:PHE319 4.7 40.5 1.0 O A:HOH882 4.7 37.8 1.0 CE2 A:TRP336 4.8 42.7 1.0 CD1 B:PHE319 4.9 30.1 1.0

Chlorine binding site 5 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl607 b:51.0 occ:1.00 N A:LYS503 3.3 50.7 1.0 N A:ASP502 3.4 54.4 1.0 N A:VAL501 3.5 45.9 1.0 CG A:LYS503 3.7 52.8 1.0 CB A:LYS503 3.9 44.8 1.0 CB A:GLU500 4.0 47.0 1.0 CA A:ASP502 4.0 55.3 1.0 CB A:ASP502 4.0 53.7 1.0 C A:VAL501 4.1 50.0 1.0 CE A:LYS503 4.1 54.5 1.0 CA A:GLU500 4.1 45.1 1.0 C A:ASP502 4.1 52.3 1.0 CA A:LYS503 4.2 49.1 1.0 C A:GLU500 4.3 45.9 1.0 CA A:VAL501 4.3 48.4 1.0 CG A:GLU500 4.4 57.6 1.0 CD A:LYS503 4.5 52.4 1.0 CG A:ASP502 4.9 60.2 1.0 O A:VAL501 5.0 52.8 1.0

Chlorine binding site 6 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl608 b:43.6 occ:1.00 O A:HOH732 2.5 51.9 1.0 N A:PHE304 3.4 47.8 1.0 N A:ASP305 3.4 52.8 1.0 C A:LYS302 3.6 56.2 1.0 O A:LYS302 3.6 53.1 1.0 CB A:PHE304 3.7 51.4 1.0 CA A:LYS302 3.8 60.6 1.0 CA A:PHE304 3.9 50.0 1.0 N A:GLN303 4.1 55.0 1.0 CB A:ASP305 4.2 56.4 1.0 C A:PHE304 4.2 56.1 1.0 C A:GLN303 4.3 49.5 1.0 CG A:ASP305 4.3 71.1 1.0 CA A:ASP305 4.4 52.9 1.0 CB A:LYS302 4.4 57.1 1.0 OD1 A:ASP305 4.6 58.4 1.0 O A:LEU298 4.7 50.3 1.0 CA A:GLN303 4.7 51.5 1.0 OD2 A:ASP305 4.7 82.8 1.0 CG A:PHE304 4.9 57.9 1.0 O A:LYS299 4.9 58.0 1.0 N A:LYS302 4.9 51.0 1.0 CA A:LYS299 5.0 52.4 1.0

Chlorine binding site 7 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl609 b:53.8 occ:1.00 ND2 A:ASN318 3.5 36.5 1.0 CE1 A:HIS321 3.6 48.0 1.0 ND2 A:ASN320 3.6 43.4 1.0 OD1 A:ASN318 3.9 36.6 1.0 CB A:ASN320 4.0 36.2 1.0 CG A:ASN318 4.2 43.5 1.0 CG A:ASN320 4.2 38.9 1.0 ND1 A:HIS321 4.2 49.8 1.0 NH1 B:ARG436 4.4 45.2 1.0 NE2 A:HIS321 4.4 46.6 1.0 O B:HOH834 4.5 46.2 1.0 NH2 B:ARG436 4.8 40.5 1.0 O B:LYS447 4.9 41.5 1.0

Chlorine binding site 8 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl610 b:71.9 occ:1.00 N A:ARG457 3.3 50.6 1.0 CB A:ASP456 3.3 68.0 1.0 CB A:TYR454 3.5 52.3 1.0 CA A:TYR454 3.6 54.2 1.0 N A:ASP456 3.6 54.3 1.0 C A:TYR454 3.8 53.3 1.0 CA A:ASP456 3.8 59.7 1.0 O A:TYR454 3.9 57.5 1.0 C A:ASP456 4.0 55.1 1.0 CD1 A:TYR454 4.0 54.5 1.0 CB A:ARG457 4.1 56.7 1.0 CG A:ASP456 4.2 76.0 1.0 CG A:TYR454 4.2 55.9 1.0 CA A:ARG457 4.3 52.7 1.0 OD2 A:ASP456 4.3 81.5 1.0 N A:PRO455 4.4 54.9 1.0 O A:HOH829 4.5 70.5 1.0 C A:PRO455 4.7 58.8 1.0 O A:HOH872 4.7 47.7 0.5 CD A:PRO455 4.9 54.3 1.0

Chlorine binding site 9 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl611 b:77.9 occ:1.00 O A:PRO475 4.0 47.4 1.0 CG1 A:VAL478 4.1 43.9 1.0 CB A:TRP487 4.6 45.8 1.0 CG A:TRP487 4.9 51.6 1.0

Chlorine binding site 10 out of 25 in the Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Structure of the Apo Zgcgsa Carrageenan-Sulfatase (S1_19) From the Marine Bacterium Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl605 b:41.7 occ:1.00 O B:HOH787 2.7 45.9 1.0 CG B:LYS503 3.4 54.0 1.0 N B:VAL501 3.4 46.6 1.0 N B:ASP502 3.5 46.8 1.0 N B:LYS503 3.6 44.0 1.0 CE B:LYS503 3.8 56.5 1.0 CB B:GLU500 3.9 47.7 1.0 CA B:GLU500 4.0 49.5 1.0 CB B:LYS503 4.0 40.0 1.0 CD B:LYS503 4.1 61.6 1.0 C B:VAL501 4.2 48.9 1.0 C B:GLU500 4.2 48.0 1.0 CG B:GLU500 4.3 45.0 1.0 CA B:ASP502 4.3 47.3 1.0 CB B:ASP502 4.3 50.7 1.0 CA B:VAL501 4.3 43.9 1.0 C B:ASP502 4.4 41.9 1.0 CA B:LYS503 4.4 44.3 1.0 NZ B:LYS503 5.0 50.0 1.0

A.Chevenier, M.Fanuel, E.Sokolova, D.Mico Latorre, D.Jouanneau, A.Jeudy, A.Prechoux, M.K.Zuhlke, J.Bartel, D.Becher, M.Czjzek, D.Ropartz, G.Michel, E.Ficko-Blean. Structure, Function and Catalytic Mechanism of the Carrageenan-Sulfatases From the Marine Bacterium Zobellia Galactanivorans Dsij T. Carbohydr Polym V. 358 23487 2025.
ISSN: ESSN 1879-1344
PubMed: 40383559
DOI: 10.1016/J.CARBPOL.2025.123487