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Chlorine in PDB 9kp6: Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State

Other elements in 9kp6:

The structure of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State (pdb code 9kp6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State, PDB code: 9kp6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 9kp6

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Chlorine binding site 1 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:94.6
occ:1.00
 NH2 A:ARG218 3.2 69.8 1.0
CB B:TRP102 3.9 68.9 1.0
CA A:THR219 4.2 47.7 1.0
CG B:TRP102 4.2 67.4 1.0
CZ A:ARG218 4.3 69.8 1.0
CD1 B:TRP102 4.4 68.7 1.0
O A:ARG218 4.5 58.5 1.0
OG1 A:THR219 4.6 56.5 1.0
NE A:ARG218 4.7 63.7 1.0
CB B:ASP104 4.7 76.6 1.0
N A:THR219 4.8 48.3 1.0
CB A:THR219 4.8 46.7 1.0
CA A:GLY222 4.8 49.2 1.0
C A:ARG218 4.9 50.2 1.0
CG2 A:THR219 4.9 43.8 1.0
CG B:ARG105 5.0 70.5 1.0
O A:THR219 5.0 58.4 1.0
O B:TRP102 5.0 75.4 1.0

Chlorine binding site 2 out of 10 in 9kp6

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Chlorine binding site 2 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:109.5
occ:1.00
 OH A:TYR68 2.4 116.4 1.0
OH A:TYR72 3.1 104.4 1.0
OG1 B:THR277 3.4 79.2 1.0
CB B:PRO274 3.7 81.6 1.0
CZ A:TYR68 3.7 114.5 1.0
CA B:PRO274 3.7 87.8 1.0
CZ A:TYR72 3.9 109.7 1.0
N B:THR277 4.0 77.8 1.0
C B:PRO274 4.1 87.8 1.0
CZ B:PHE257 4.1 104.3 1.0
CE2 A:TYR68 4.2 111.1 1.0
CB B:THR277 4.3 71.9 1.0
N B:PHE276 4.4 85.2 1.0
N B:VAL275 4.5 83.0 1.0
CE2 A:TYR72 4.5 112.6 1.0
CB B:PHE276 4.6 92.2 1.0
CE1 A:TYR72 4.6 106.0 1.0
C B:PHE276 4.6 77.7 1.0
O B:PRO274 4.6 89.3 1.0
CE1 B:PHE257 4.7 107.1 1.0
CA B:PHE276 4.7 85.9 1.0
CD B:ARG255 4.7 82.0 1.0
CA B:THR277 4.8 70.2 1.0
CE1 A:TYR68 4.8 110.6 1.0
CE2 B:PHE257 4.9 103.3 1.0

Chlorine binding site 3 out of 10 in 9kp6

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Chlorine binding site 3 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:86.1
occ:1.00
 NH2 B:ARG218 3.3 68.8 1.0
CB C:TRP102 3.9 65.4 1.0
CA B:THR219 4.2 46.2 1.0
CG C:TRP102 4.3 65.3 1.0
CZ B:ARG218 4.3 70.5 1.0
CD1 C:TRP102 4.4 66.7 1.0
O B:ARG218 4.5 59.0 1.0
OG1 B:THR219 4.6 57.8 1.0
NE B:ARG218 4.7 66.0 1.0
CB C:ASP104 4.7 74.1 1.0
N B:THR219 4.7 47.9 1.0
CA B:GLY222 4.8 48.7 1.0
CB B:THR219 4.8 47.3 1.0
C B:ARG218 4.8 50.2 1.0
CG2 B:THR219 4.9 46.3 1.0
O B:THR219 5.0 57.0 1.0
CG C:ARG105 5.0 68.3 1.0

Chlorine binding site 4 out of 10 in 9kp6

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Chlorine binding site 4 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:104.6
occ:1.00
 OH B:TYR68 2.6 110.7 1.0
OH B:TYR72 3.1 101.0 1.0
OG1 C:THR277 3.6 79.0 1.0
CZ B:TYR68 3.7 112.1 1.0
CB C:PRO274 3.8 77.9 1.0
CA C:PRO274 3.8 88.5 1.0
CZ B:TYR72 3.8 102.5 1.0
CE2 B:TYR68 3.9 107.8 1.0
CZ C:PHE257 4.1 107.1 1.0
N C:THR277 4.1 82.0 1.0
C C:PRO274 4.2 88.7 1.0
CE2 B:TYR72 4.4 106.1 1.0
N C:PHE276 4.4 82.8 1.0
CB C:THR277 4.4 71.4 1.0
CB C:PHE276 4.5 90.8 1.0
N C:VAL275 4.5 83.5 1.0
CE1 B:TYR72 4.6 99.5 1.0
CE1 C:PHE257 4.6 112.0 1.0
C C:PHE276 4.7 80.1 1.0
CA C:PHE276 4.7 85.2 1.0
O C:PRO274 4.7 89.4 1.0
CD C:ARG255 4.9 82.7 1.0
CA C:THR277 4.9 72.0 1.0
CE1 B:TYR68 4.9 109.7 1.0
CE2 C:PHE257 4.9 106.9 1.0

Chlorine binding site 5 out of 10 in 9kp6

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Chlorine binding site 5 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl702

b:90.9
occ:1.00
 NH2 C:ARG218 3.2 67.8 1.0
CB D:TRP102 3.9 66.8 1.0
CA C:THR219 4.2 46.1 1.0
CG D:TRP102 4.3 66.5 1.0
CZ C:ARG218 4.3 69.0 1.0
CD1 D:TRP102 4.4 67.9 1.0
O C:ARG218 4.5 56.9 1.0
OG1 C:THR219 4.6 58.4 1.0
NE C:ARG218 4.7 66.4 1.0
CB D:ASP104 4.7 75.4 1.0
N C:THR219 4.7 46.6 1.0
CA C:GLY222 4.8 48.0 1.0
CB C:THR219 4.8 46.8 1.0
C C:ARG218 4.8 49.3 1.0
CG2 C:THR219 4.9 45.5 1.0
O C:THR219 5.0 56.0 1.0
CG D:ARG105 5.0 66.6 1.0

Chlorine binding site 6 out of 10 in 9kp6

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Chlorine binding site 6 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl703

b:98.3
occ:1.00
 OH C:TYR68 2.6 103.7 1.0
OH C:TYR72 3.3 102.4 1.0
OG1 D:THR277 3.4 80.9 1.0
CB D:PRO274 3.5 77.8 1.0
CA D:PRO274 3.6 84.6 1.0
CZ C:TYR68 3.8 106.8 1.0
N D:THR277 3.9 81.5 1.0
C D:PRO274 4.0 88.4 1.0
CZ C:TYR72 4.1 103.7 1.0
CZ D:PHE257 4.1 101.1 1.0
CE2 C:TYR68 4.2 104.8 1.0
CB D:THR277 4.2 73.1 1.0
N D:PHE276 4.2 81.5 1.0
N D:VAL275 4.3 83.8 1.0
O D:PRO274 4.5 90.5 1.0
C D:PHE276 4.5 81.5 1.0
CB D:PHE276 4.5 88.5 1.0
CA D:PHE276 4.6 84.7 1.0
CE1 C:TYR72 4.7 106.2 1.0
CA D:THR277 4.7 72.4 1.0
CE2 C:TYR72 4.7 100.5 1.0
CE1 D:PHE257 4.8 106.4 1.0
CD D:ARG255 4.9 82.6 1.0
CE2 D:PHE257 4.9 100.5 1.0
N D:PRO274 5.0 86.9 1.0

Chlorine binding site 7 out of 10 in 9kp6

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Chlorine binding site 7 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl702

b:91.3
occ:1.00
 NH2 D:ARG218 3.3 67.0 1.0
CB E:TRP102 3.8 66.9 1.0
CG E:TRP102 4.2 66.7 1.0
CA D:THR219 4.3 42.7 1.0
CD1 E:TRP102 4.4 67.3 1.0
CZ D:ARG218 4.4 65.8 1.0
O D:ARG218 4.6 56.9 1.0
OG1 D:THR219 4.6 54.0 1.0
CB E:ASP104 4.7 72.7 1.0
NE D:ARG218 4.8 62.8 1.0
N D:THR219 4.8 44.2 1.0
CB D:THR219 4.9 43.4 1.0
CA D:GLY222 4.9 46.7 1.0
C D:ARG218 4.9 47.0 1.0
CG2 D:THR219 4.9 40.8 1.0
CG E:ARG105 4.9 68.2 1.0
O E:TRP102 5.0 76.5 1.0

Chlorine binding site 8 out of 10 in 9kp6

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Chlorine binding site 8 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl703

b:100.8
occ:1.00
 OH D:TYR68 2.5 109.5 1.0
OH D:TYR72 3.4 104.8 1.0
OG1 E:THR277 3.4 80.9 1.0
CB E:PRO274 3.6 76.2 1.0
CA E:PRO274 3.6 83.8 1.0
CZ D:TYR68 3.7 111.5 1.0
N E:THR277 3.9 79.0 1.0
C E:PRO274 4.0 85.9 1.0
CZ D:TYR72 4.1 105.1 1.0
CZ E:PHE257 4.1 104.2 1.0
CE1 D:TYR68 4.1 110.5 1.0
CB E:THR277 4.2 73.4 1.0
N E:PHE276 4.2 79.5 1.0
N E:VAL275 4.4 81.1 1.0
CE1 D:TYR72 4.5 101.3 1.0
CB E:PHE276 4.5 85.5 1.0
O E:PRO274 4.5 86.5 1.0
C E:PHE276 4.5 77.1 1.0
CA E:PHE276 4.6 81.9 1.0
CA E:THR277 4.7 70.7 1.0
CE1 E:PHE257 4.8 109.1 1.0
CE2 D:TYR68 4.9 106.6 1.0
CD E:ARG255 4.9 81.3 1.0
CE2 D:TYR72 4.9 105.4 1.0
CE2 E:PHE257 4.9 102.9 1.0
N E:PRO274 5.0 87.8 1.0

Chlorine binding site 9 out of 10 in 9kp6

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Chlorine binding site 9 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl701

b:105.8
occ:1.00
 OH E:TYR68 2.4 111.9 1.0
OH E:TYR72 3.1 101.5 1.0
OG1 A:THR277 3.4 82.5 1.0
CB A:PRO274 3.6 76.4 1.0
CZ E:TYR68 3.7 111.9 1.0
CA A:PRO274 3.7 84.1 1.0
CZ E:TYR72 3.9 104.8 1.0
N A:THR277 4.0 79.4 1.0
C A:PRO274 4.1 87.3 1.0
CZ A:PHE257 4.1 101.0 1.0
CE2 E:TYR68 4.2 111.0 1.0
CB A:THR277 4.3 72.7 1.0
N A:PHE276 4.3 83.7 1.0
N A:VAL275 4.5 84.0 1.0
CE2 E:TYR72 4.5 108.8 1.0
CB A:PHE276 4.6 88.9 1.0
C A:PHE276 4.6 79.1 1.0
O A:PRO274 4.6 88.6 1.0
CE1 E:TYR72 4.7 101.9 1.0
CE1 A:PHE257 4.7 103.8 1.0
CA A:PHE276 4.7 84.2 1.0
CA A:THR277 4.7 70.1 1.0
CE1 E:TYR68 4.8 109.1 1.0
CD A:ARG255 4.8 79.0 1.0
CE2 A:PHE257 4.9 100.6 1.0

Chlorine binding site 10 out of 10 in 9kp6

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Chlorine binding site 10 out of 10 in the Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cryo-Em Structure of Mouse Bestrophin-1 in A Closed State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl703

b:89.0
occ:1.00
 NH2 E:ARG218 3.2 67.1 1.0
CB A:TRP102 3.9 71.4 1.0
CA E:THR219 4.2 46.4 1.0
CG A:TRP102 4.3 68.9 1.0
CZ E:ARG218 4.3 66.3 1.0
O E:ARG218 4.4 57.5 1.0
CD1 A:TRP102 4.4 68.5 1.0
OG1 E:THR219 4.6 60.3 1.0
N E:THR219 4.7 46.4 1.0
NE E:ARG218 4.7 64.0 1.0
CB A:ASP104 4.8 72.9 1.0
CA E:GLY222 4.8 48.3 1.0
CB E:THR219 4.8 48.4 1.0
C E:ARG218 4.8 48.4 1.0
CG2 E:THR219 4.9 45.4 1.0
O E:THR219 4.9 55.9 1.0

Reference:

K.W.Kim, E.Lee, A.Ko, J.Hwang, K.Park, B.C.Lee, K.W.Kim, W.J.Oh, K.Kim, H.H.Lim. Cryo-Em Structures of Mouse Bestrophin 1 Channel in Closed and Partially Open Conformations. Mol.Cells 00208 2025.
ISSN: ISSN 1016-8478
PubMed: 40043778
DOI: 10.1016/J.MOCELL.2025.100208
Page generated: Sun Jul 13 17:10:12 2025

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