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Chlorine in PDB 9lmk: Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)

Enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)

All present enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds):
3.2.1.17;

Protein crystallography data

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds), PDB code: 9lmk was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.99 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.18, 79.18, 38.35, 90, 90, 90
R / Rfree (%) 18.3 / 21.4

Other elements in 9lmk:

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) (pdb code 9lmk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds), PDB code: 9lmk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9lmk

Go back to Chlorine Binding Sites List in 9lmk
Chlorine binding site 1 out of 2 in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.0
occ:1.00
OH A:TYR23 2.9 23.4 1.0
O A:HOH348 3.3 30.1 1.0
CZ A:TYR23 3.7 21.1 1.0
CE2 A:TYR23 3.7 21.9 1.0
CA A:GLY104 4.1 23.8 1.0
O A:ARG21 4.6 29.6 1.0
N A:GLY104 4.7 22.8 1.0
O A:HOH308 4.8 33.1 1.0
CE1 A:TYR23 4.9 22.4 1.0
CD2 A:TYR23 4.9 23.2 1.0

Chlorine binding site 2 out of 2 in 9lmk

Go back to Chlorine Binding Sites List in 9lmk
Chlorine binding site 2 out of 2 in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:36.7
occ:1.00
OG A:SER24 3.0 28.3 1.0
N A:GLY26 3.1 22.1 1.0
CB A:SER24 3.5 25.7 1.0
CA A:GLY26 3.5 22.0 1.0
CA A:GLN121 3.6 30.5 1.0
CD1 A:ILE124 3.8 34.6 1.0
CB A:GLN121 3.9 35.1 1.0
N A:GLN121 4.0 30.1 1.0
N A:LEU25 4.0 25.5 1.0
CG A:GLN121 4.1 41.5 1.0
C A:SER24 4.2 24.9 1.0
CD A:GLN121 4.2 49.6 1.0
C A:LEU25 4.2 23.3 1.0
CG1 A:ILE124 4.3 29.1 1.0
O A:VAL120 4.3 27.8 1.0
C A:VAL120 4.3 29.2 1.0
CG2 A:VAL120 4.4 30.2 1.0
OE1 A:GLN121 4.4 52.4 1.0
CA A:SER24 4.5 23.6 1.0
CA A:LEU25 4.6 24.4 1.0
C A:GLY26 4.6 21.2 1.0
O A:SER24 4.7 23.8 1.0
N A:ASN27 4.7 20.9 1.0
NE2 A:GLN121 4.7 52.5 1.0
CB A:LEU25 4.9 25.5 1.0
C A:GLN121 4.9 31.0 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Sun Jul 13 17:12:07 2025

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