Atomistry » Chlorine » PDB 9lvx-9oa8 » 9mp3
Atomistry »
  Chlorine »
    PDB 9lvx-9oa8 »
      9mp3 »

Chlorine in PDB 9mp3: Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)

Enzymatic activity of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)

All present enzymatic activity of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms):
3.2.1.17;

Protein crystallography data

The structure of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms), PDB code: 9mp3 was solved by M.J.Mcleod, J.A.Indergaard, R.E.Thorne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.77 / 1.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.462, 77.462, 38.288, 90, 90, 90
R / Rfree (%) 17.9 / 22.4

Other elements in 9mp3:

The structure of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) (pdb code 9mp3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms), PDB code: 9mp3:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 9mp3

Go back to Chlorine Binding Sites List in 9mp3
Chlorine binding site 1 out of 4 in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.9
occ:1.00
OH A:TYR41 3.0 14.2 1.0
O A:HOH445 3.2 27.9 1.0
O A:HOH363 3.2 16.8 1.0
CZ A:TYR41 3.7 12.2 1.0
CE2 A:TYR41 3.7 13.3 1.0
CA A:GLY122 4.0 15.4 1.0
O A:ARG39 4.5 15.9 1.0
N A:GLY122 4.7 16.4 1.0
CE1 A:TYR41 4.9 12.6 1.0
CD2 A:TYR41 4.9 13.9 1.0

Chlorine binding site 2 out of 4 in 9mp3

Go back to Chlorine Binding Sites List in 9mp3
Chlorine binding site 2 out of 4 in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:20.2
occ:1.00
OG A:SER42 3.1 17.2 1.0
N A:GLY44 3.1 14.5 1.0
O A:HOH414 3.1 38.1 1.0
O A:HOH481 3.2 29.3 1.0
CA A:GLY44 3.5 14.6 1.0
CB A:SER42 3.5 16.6 1.0
CA A:GLN139 3.6 16.9 1.0
CD1 A:ILE142 3.8 25.8 1.0
CB A:GLN139 3.9 21.3 1.0
N A:GLN139 4.0 17.9 1.0
CG A:GLN139 4.1 25.5 1.0
N A:LEU43 4.1 14.2 1.0
CG1 A:ILE142 4.2 20.8 1.0
C A:LEU43 4.3 14.8 1.0
C A:SER42 4.3 15.2 1.0
O A:VAL138 4.3 17.8 1.0
C A:VAL138 4.4 17.4 1.0
CG2 A:VAL138 4.4 19.6 1.0
C A:GLY44 4.5 13.8 1.0
CA A:SER42 4.6 14.5 1.0
N A:ASN45 4.6 13.8 1.0
CA A:LEU43 4.7 15.1 1.0
C A:GLN139 4.8 19.5 1.0
O A:SER42 4.8 14.7 1.0
O A:HOH358 4.9 19.9 1.0
O A:GLN139 5.0 19.8 1.0

Chlorine binding site 3 out of 4 in 9mp3

Go back to Chlorine Binding Sites List in 9mp3
Chlorine binding site 3 out of 4 in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:23.1
occ:1.00
O A:HOH369 3.1 18.4 1.0
N A:THR87 3.3 18.9 1.0
O A:THR87 3.4 20.7 1.0
O A:HOH315 3.5 36.4 1.0
C A:GLY85 3.5 21.4 1.0
OD1 A:ASN83 3.5 19.6 1.0
CA A:GLY85 3.5 18.0 1.0
C A:THR87 3.6 18.6 1.0
N A:ARG86 3.6 19.1 1.0
N A:GLY85 3.6 17.4 1.0
OG A:SER90 3.9 21.1 1.0
CA A:THR87 3.9 19.4 1.0
O A:HOH399 4.1 22.3 1.0
O A:GLY85 4.1 23.1 1.0
N A:PRO88 4.2 23.0 1.0
OD1 A:ASP84 4.2 15.7 1.0
CB A:THR87 4.2 17.1 1.0
C A:ARG86 4.3 19.8 1.0
CA A:ARG86 4.4 19.1 1.0
CA A:PRO88 4.6 26.1 1.0
C A:ASP84 4.7 16.1 1.0
CG A:ASN83 4.7 19.9 1.0
NA A:NA205 4.8 18.9 1.0
OG1 A:THR87 4.8 16.8 1.0
N A:ASP84 4.8 15.9 1.0
O A:HOH317 5.0 30.6 1.0

Chlorine binding site 4 out of 4 in 9mp3

Go back to Chlorine Binding Sites List in 9mp3
Chlorine binding site 4 out of 4 in the Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Mix & Quench Time Resolved Lysozyme - NAG1 Complex (0 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:22.9
occ:1.00
O A:HOH320 3.0 28.8 1.0
O A:HOH331 3.2 30.7 1.0
O A:HOH330 3.3 24.6 1.0
N A:ILE106 3.3 15.9 1.0
O A:HOH440 3.4 30.4 1.0
CG1 A:ILE106 3.7 16.8 1.0
CA A:ASP105 3.8 17.6 1.0
CZ A:PHE21 3.9 18.2 1.0
O A:SER104 4.0 21.4 0.5
O A:SER104 4.0 21.4 0.6
CB A:ALA29 4.0 16.7 1.0
C A:ASP105 4.1 16.8 1.0
OD1 A:ASP105 4.1 23.1 1.0
NH2 A:ARG32 4.2 23.3 1.0
CG2 A:ILE106 4.2 19.9 1.0
CB A:ILE106 4.3 14.0 1.0
CA A:ILE106 4.3 15.3 1.0
CG A:ASP105 4.4 24.4 1.0
NE2 A:HIS33 4.4 20.9 1.0
CE2 A:PHE21 4.4 17.7 1.0
CD1 A:ILE106 4.6 18.4 1.0
CB A:ASP105 4.6 20.9 1.0
N A:ASP105 4.8 16.1 1.0
CD2 A:HIS33 4.8 19.5 1.0
C A:SER104 4.8 18.2 0.5
C A:SER104 4.8 18.1 0.6
OD2 A:ASP105 4.9 33.2 1.0

Reference:

J.A.Indergaard, K.Mahmood, L.Gabriel, G.Zhong, A.Lastovka, M.J.Mcleod, R.E.Thorne. Instrumentation and Methods For Efficient Time-Resolved X-Ray Crystallography of Biomolecular Systems with Sub-10 Ms Time Resolution. Iucrj 2025.
ISSN: ESSN 2052-2525
PubMed: 40277177
DOI: 10.1107/S205225252500288X
Page generated: Sun Jul 13 17:14:20 2025

Last articles

Cu in 2BHF
Cu in 2AZU
Cu in 2B3I
Cu in 2AQT
Cu in 2AZA
Cu in 2AQR
Cu in 2AQS
Cu in 2AQQ
Cu in 2AQN
Cu in 2APS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy