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Chlorine in PDB 9ms7: Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2)

Protein crystallography data

The structure of Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2), PDB code: 9ms7 was solved by C.A.Smith, G.W.Buchko, R.Wu, J.R.Cort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.80 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.046, 34.738, 110.76, 90, 107.5, 90
R / Rfree (%) 15.1 / 19.2

Other elements in 9ms7:

The structure of Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2) also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2) (pdb code 9ms7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2), PDB code: 9ms7:

Chlorine binding site 1 out of 1 in 9ms7

Go back to Chlorine Binding Sites List in 9ms7
Chlorine binding site 1 out of 1 in the Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Phage Endolysin Identified From A Metagenomic Survey of Prosser, Washington Soil (PWE2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:29.9
occ:1.00
NH1 B:ARG60 3.0 24.4 0.5
O B:HOH362 3.1 28.1 1.0
NE B:ARG92 3.2 22.6 1.0
CG B:GLU122 3.3 23.3 0.5
CD B:ARG60 3.3 28.8 0.5
OG B:SER125 3.5 26.4 1.0
NH2 B:ARG92 3.6 25.3 1.0
CB B:GLU122 3.7 25.5 0.5
CA B:GLU122 3.8 22.3 0.5
CZ B:ARG92 3.8 23.2 1.0
CA B:GLU122 3.8 20.2 0.5
CB A:THR126 3.8 18.2 1.0
CB B:SER125 3.9 21.4 1.0
CG2 A:THR126 3.9 19.9 1.0
CB B:GLU122 3.9 22.0 0.5
CZ B:ARG60 3.9 29.1 0.5
NE B:ARG60 4.0 32.7 0.5
CG B:ARG60 4.1 30.1 0.5
CG B:ARG60 4.1 27.2 0.5
CD B:ARG92 4.2 20.9 1.0
CD B:GLU122 4.2 28.2 0.5
NE B:ARG60 4.2 34.5 0.5
CD B:ARG60 4.2 32.8 0.5
OE2 B:GLU122 4.3 30.1 0.5
CD A:PRO127 4.3 20.4 1.0
O B:GLU122 4.4 19.8 0.5
O B:GLU122 4.4 21.8 0.5
CB B:ARG60 4.4 24.8 0.5
CB B:ARG60 4.5 26.6 0.5
C B:GLU122 4.6 20.1 0.5
C B:GLU122 4.6 21.6 0.5
OG1 A:THR126 4.7 18.1 1.0
CA A:THR126 4.8 18.5 1.0
N B:GLU122 4.8 22.6 0.5
N B:GLU122 4.8 21.7 0.5
CG B:ARG92 4.9 20.2 1.0

Reference:

G.W.Buchko, C.A.Smith, R.Wu, T.D.Alfaro, R.S.Mcclure, J.R.Cort, K.F.Hofmockel. Crystal Structures of Two Phage Endolysins Identified From A Metagenomic Survey of South-Central Washington Soil To Be Published.
Page generated: Sun Jul 13 17:16:11 2025

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