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Chlorine in PDB 9ugi: Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography

Enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography

All present enzymatic activity of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography, PDB code: 9ugi was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.52 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.04, 79.04, 38.25, 90, 90, 90
R / Rfree (%) 17.4 / 20.2

Other elements in 9ugi:

The structure of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (pdb code 9ugi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography, PDB code: 9ugi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 9ugi

Go back to Chlorine Binding Sites List in 9ugi
Chlorine binding site 1 out of 2 in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.4
occ:1.00
OH A:TYR41 2.9 22.4 1.0
O A:HOH345 3.4 32.0 1.0
CZ A:TYR41 3.7 19.4 1.0
CE2 A:TYR41 3.7 22.7 1.0
CA A:GLY122 4.0 24.6 1.0
O A:HOH309 4.6 35.1 1.0
N A:GLY122 4.6 25.6 1.0
O A:ARG39 4.7 29.3 1.0
CE1 A:TYR41 4.9 21.2 1.0
CD2 A:TYR41 4.9 20.5 1.0

Chlorine binding site 2 out of 2 in 9ugi

Go back to Chlorine Binding Sites List in 9ugi
Chlorine binding site 2 out of 2 in the Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:42.3
occ:1.00
OG A:SER42 3.0 29.7 1.0
N A:GLY44 3.0 21.4 1.0
CA A:GLY44 3.4 23.2 1.0
CB A:SER42 3.5 28.6 1.0
CD1 A:ILE142 3.7 37.5 1.0
CA A:GLN139 3.7 34.8 1.0
N A:LEU43 4.0 25.9 1.0
N A:GLN139 4.0 31.1 1.0
CB A:GLN139 4.1 37.6 1.0
C A:LEU43 4.2 23.6 1.0
C A:SER42 4.2 27.6 1.0
CG1 A:ILE142 4.2 31.0 1.0
O A:VAL138 4.3 29.7 1.0
C A:VAL138 4.4 30.8 1.0
CG A:GLN139 4.4 46.5 1.0
CG2 A:VAL138 4.5 25.7 1.0
CA A:SER42 4.5 26.5 1.0
CA A:LEU43 4.5 26.5 1.0
C A:GLY44 4.5 23.5 1.0
O A:SER42 4.6 23.3 1.0
N A:ASN45 4.7 21.2 1.0
CB A:LEU43 4.8 25.6 1.0
C A:GLN139 4.9 33.6 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Sun Jul 13 17:21:33 2025

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