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Chlorine in PDB 1b98: Neurotrophin 4 (Homodimer)

Protein crystallography data

The structure of Neurotrophin 4 (Homodimer), PDB code: 1b98 was solved by R.C.Robinson, C.Radziejewski, D.I.Stuart, E.Y.Jones, S.Choe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.800, 50.800, 53.000, 90.00, 109.40, 90.00
R / Rfree (%) 23.5 / 33.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Neurotrophin 4 (Homodimer) (pdb code 1b98). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Neurotrophin 4 (Homodimer), PDB code: 1b98:

Chlorine binding site 1 out of 1 in 1b98

Go back to Chlorine Binding Sites List in 1b98
Chlorine binding site 1 out of 1 in the Neurotrophin 4 (Homodimer)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Neurotrophin 4 (Homodimer) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl200

b:27.8
occ:1.00
O M:HOH134 3.0 34.4 1.0
N A:CYS121 3.2 29.8 1.0
N M:CYS121 3.3 28.7 1.0
CA A:VAL120 3.8 34.3 1.0
CA M:VAL120 3.8 28.2 1.0
CG1 M:VAL16 3.8 33.3 1.0
CB M:VAL120 3.8 28.7 1.0
C A:VAL120 3.9 33.2 1.0
CB M:CYS121 4.0 26.7 1.0
CG1 A:VAL16 4.0 32.9 1.0
CB A:CYS121 4.0 30.5 1.0
C M:VAL120 4.0 27.4 1.0
CB A:VAL120 4.1 36.2 1.0
CA M:CYS121 4.2 28.9 1.0
CA A:CYS121 4.2 30.3 1.0
CG1 M:VAL120 4.4 27.8 1.0
O A:CYS119 4.5 29.2 1.0
O A:CYS121 4.6 28.4 1.0
CB A:VAL16 4.7 32.2 1.0
O M:CYS119 4.7 26.9 1.0
O M:CYS121 4.7 28.4 1.0
CG1 A:VAL120 4.8 36.0 1.0
C M:CYS121 4.9 28.5 1.0
CB M:VAL16 5.0 32.8 1.0
C A:CYS121 5.0 30.1 1.0

Reference:

R.C.Robinson, C.Radziejewski, G.Spraggon, J.Greenwald, M.R.Kostura, L.D.Burtnick, D.I.Stuart, S.Choe, E.Y.Jones. The Structures of the Neurotrophin 4 Homodimer and the Brain-Derived Neurotrophic Factor/Neurotrophin 4 Heterodimer Reveal A Common Trk-Binding Site. Protein Sci. V. 8 2589 1999.
ISSN: ISSN 0961-8368
PubMed: 10631974
Page generated: Sat Dec 12 08:31:49 2020

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