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Chlorine in PDB 1cxv: Structure of Recombinant Mouse Collagenase-3 (Mmp-13)

Protein crystallography data

The structure of Structure of Recombinant Mouse Collagenase-3 (Mmp-13), PDB code: 1cxv was solved by I.Botos, E.Meyer, S.M.Swanson, V.Lemaitre, Y.Eeckhout, E.F.Meyer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.360, 48.460, 74.940, 90.00, 108.15, 90.00
R / Rfree (%) 19.6 / 23.4

Other elements in 1cxv:

The structure of Structure of Recombinant Mouse Collagenase-3 (Mmp-13) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Recombinant Mouse Collagenase-3 (Mmp-13) (pdb code 1cxv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Recombinant Mouse Collagenase-3 (Mmp-13), PDB code: 1cxv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1cxv

Go back to Chlorine Binding Sites List in 1cxv
Chlorine binding site 1 out of 2 in the Structure of Recombinant Mouse Collagenase-3 (Mmp-13)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Recombinant Mouse Collagenase-3 (Mmp-13) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl10

b:24.7
occ:1.00
CL28 A:CBP10 0.0 24.7 1.0
C25 A:CBP10 1.7 25.2 1.0
C26 A:CBP10 2.7 26.1 1.0
C24 A:CBP10 2.7 25.5 1.0
OG1 A:THR224 3.3 39.9 1.0
O A:HOH848 3.3 19.6 1.0
O A:THR224 3.4 41.2 1.0
O A:HOH627 3.4 32.3 1.0
C27 A:CBP10 4.0 25.3 1.0
C23 A:CBP10 4.0 25.4 1.0
O A:ILE222 4.2 29.9 1.0
N A:THR224 4.3 37.0 1.0
C A:THR224 4.3 40.6 1.0
O A:ALA217 4.4 20.9 1.0
CB A:THR224 4.5 39.5 1.0
C22 A:CBP10 4.5 25.9 1.0
CD1 A:LEU218 4.6 20.5 1.0
CA A:THR224 4.6 39.3 1.0
CA A:LEU218 4.7 20.4 1.0
O A:LEU218 4.8 20.5 1.0

Chlorine binding site 2 out of 2 in 1cxv

Go back to Chlorine Binding Sites List in 1cxv
Chlorine binding site 2 out of 2 in the Structure of Recombinant Mouse Collagenase-3 (Mmp-13)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Recombinant Mouse Collagenase-3 (Mmp-13) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl11

b:25.1
occ:1.00
CL28 B:CBP11 0.0 25.1 1.0
C25 B:CBP11 1.7 25.7 1.0
C26 B:CBP11 2.7 25.7 1.0
C24 B:CBP11 2.7 25.7 1.0
OG1 B:THR524 3.3 39.7 1.0
O B:THR524 3.3 41.4 1.0
O B:HOH623 3.4 28.1 1.0
O B:HOH658 3.6 34.0 1.0
C27 B:CBP11 4.0 25.5 1.0
C23 B:CBP11 4.0 25.8 1.0
O B:ILE522 4.2 29.8 1.0
N B:THR524 4.2 36.8 1.0
C B:THR524 4.3 40.6 1.0
O B:ALA517 4.5 20.1 1.0
CB B:THR524 4.5 39.2 1.0
C22 B:CBP11 4.5 25.9 1.0
CA B:THR524 4.6 39.1 1.0
CD1 B:LEU518 4.7 20.1 1.0
CA B:LEU518 4.7 20.4 1.0
O B:LEU518 4.9 20.3 1.0

Reference:

I.Botos, E.Meyer, S.M.Swanson, V.Lemaitre, Y.Eeckhout, E.F.Meyer. Structure of Recombinant Mouse Collagenase-3 (Mmp-13). J.Mol.Biol. V. 292 837 1999.
ISSN: ISSN 0022-2836
PubMed: 10525409
DOI: 10.1006/JMBI.1999.3068
Page generated: Sat Dec 12 08:33:32 2020

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