Chlorine in PDB 1dqt: The Crystal Structure of Murine CTLA4 (CD152)
Protein crystallography data
The structure of The Crystal Structure of Murine CTLA4 (CD152), PDB code: 1dqt
was solved by
D.A.Ostrov,
W.Shi,
J.C.Schwartz,
S.C.Almo,
S.G.Nathenson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.00
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
112.850,
112.850,
102.504,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.1 /
25.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Crystal Structure of Murine CTLA4 (CD152)
(pdb code 1dqt). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
The Crystal Structure of Murine CTLA4 (CD152), PDB code: 1dqt:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1dqt
Go back to
Chlorine Binding Sites List in 1dqt
Chlorine binding site 1 out
of 4 in the The Crystal Structure of Murine CTLA4 (CD152)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Crystal Structure of Murine CTLA4 (CD152) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:46.4
occ:1.00
|
O
|
A:HOH929
|
2.5
|
25.4
|
1.0
|
N
|
A:SER18
|
3.1
|
21.1
|
1.0
|
O
|
A:VAL16
|
3.6
|
20.2
|
1.0
|
O
|
B:SER18
|
3.6
|
23.7
|
1.0
|
CA
|
A:ALA17
|
3.6
|
20.7
|
1.0
|
O
|
A:SER18
|
3.7
|
22.6
|
1.0
|
C
|
A:ALA17
|
3.8
|
21.2
|
1.0
|
CG1
|
A:VAL9
|
4.0
|
22.0
|
1.0
|
CA
|
A:SER18
|
4.0
|
21.4
|
1.0
|
O
|
A:LEU10
|
4.0
|
20.4
|
1.0
|
O
|
A:HOH513
|
4.1
|
21.0
|
1.0
|
CB
|
A:SER18
|
4.2
|
20.1
|
1.0
|
C
|
A:VAL16
|
4.3
|
21.7
|
1.0
|
N
|
A:ALA17
|
4.3
|
21.5
|
1.0
|
C
|
A:SER18
|
4.4
|
21.9
|
1.0
|
CA
|
B:PHE19
|
4.4
|
21.3
|
1.0
|
CD
|
B:PRO20
|
4.4
|
19.9
|
1.0
|
C
|
B:SER18
|
4.6
|
22.3
|
1.0
|
OG
|
A:SER18
|
4.6
|
21.2
|
1.0
|
CB
|
A:ALA17
|
4.7
|
19.6
|
1.0
|
CB
|
B:PHE19
|
4.8
|
21.1
|
1.0
|
N
|
A:SER12
|
4.9
|
22.8
|
1.0
|
CA
|
A:ALA11
|
4.9
|
21.5
|
1.0
|
C
|
A:LEU10
|
4.9
|
20.1
|
1.0
|
N
|
B:PHE19
|
5.0
|
21.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1dqt
Go back to
Chlorine Binding Sites List in 1dqt
Chlorine binding site 2 out
of 4 in the The Crystal Structure of Murine CTLA4 (CD152)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Crystal Structure of Murine CTLA4 (CD152) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:50.1
occ:1.00
|
O
|
B:HOH930
|
2.5
|
26.6
|
1.0
|
O
|
D:HOH566
|
3.0
|
29.9
|
1.0
|
O
|
A:ALA11
|
3.1
|
21.9
|
1.0
|
OE1
|
D:GLN111
|
3.4
|
32.5
|
1.0
|
O
|
B:HOH587
|
3.5
|
30.2
|
1.0
|
CA
|
A:SER12
|
3.9
|
23.4
|
1.0
|
C
|
A:ALA11
|
4.0
|
22.1
|
1.0
|
O
|
A:HOH552
|
4.1
|
21.3
|
1.0
|
OH
|
D:TYR113
|
4.1
|
22.7
|
1.0
|
N
|
A:SER13
|
4.3
|
25.2
|
1.0
|
C
|
A:SER12
|
4.3
|
24.8
|
1.0
|
O
|
D:HOH525
|
4.3
|
27.2
|
1.0
|
N
|
A:SER12
|
4.4
|
22.8
|
1.0
|
CB
|
B:PRO6
|
4.4
|
20.1
|
1.0
|
CD
|
D:GLN111
|
4.4
|
30.4
|
1.0
|
O
|
A:LEU10
|
4.4
|
20.4
|
1.0
|
NE2
|
D:GLN111
|
4.6
|
32.6
|
1.0
|
C
|
A:LEU10
|
4.8
|
20.1
|
1.0
|
O
|
A:HOH513
|
4.8
|
21.0
|
1.0
|
CB
|
A:LEU10
|
4.8
|
18.6
|
1.0
|
N
|
B:SER7
|
4.8
|
22.3
|
1.0
|
O
|
B:VAL8
|
4.8
|
23.6
|
1.0
|
CA
|
B:PRO6
|
4.9
|
20.9
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 1dqt
Go back to
Chlorine Binding Sites List in 1dqt
Chlorine binding site 3 out
of 4 in the The Crystal Structure of Murine CTLA4 (CD152)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Crystal Structure of Murine CTLA4 (CD152) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl203
b:54.2
occ:1.00
|
O
|
C:HOH931
|
2.5
|
28.7
|
1.0
|
N
|
C:SER18
|
2.9
|
19.7
|
1.0
|
O
|
D:HOH927
|
3.0
|
38.5
|
1.0
|
CA
|
C:ALA17
|
3.5
|
20.2
|
1.0
|
O
|
C:SER18
|
3.6
|
21.9
|
1.0
|
O
|
C:VAL16
|
3.7
|
21.0
|
1.0
|
C
|
C:ALA17
|
3.7
|
20.9
|
1.0
|
O
|
D:SER18
|
3.7
|
25.1
|
1.0
|
CG1
|
C:VAL9
|
3.7
|
20.3
|
1.0
|
CA
|
C:SER18
|
3.9
|
20.9
|
1.0
|
O
|
C:LEU10
|
4.1
|
20.5
|
1.0
|
CB
|
C:SER18
|
4.1
|
19.9
|
1.0
|
C
|
C:SER18
|
4.2
|
21.8
|
1.0
|
N
|
C:ALA17
|
4.3
|
21.4
|
1.0
|
C
|
C:VAL16
|
4.3
|
21.2
|
1.0
|
O
|
C:HOH537
|
4.3
|
23.7
|
1.0
|
CB
|
C:ALA17
|
4.6
|
20.5
|
1.0
|
OG
|
C:SER18
|
4.6
|
21.2
|
1.0
|
CA
|
D:PHE19
|
4.7
|
24.0
|
1.0
|
CD
|
D:PRO20
|
4.7
|
21.2
|
1.0
|
C
|
D:SER18
|
4.7
|
24.8
|
1.0
|
CA
|
C:ALA11
|
4.9
|
22.5
|
1.0
|
C
|
C:LEU10
|
4.9
|
20.6
|
1.0
|
O
|
C:ALA17
|
4.9
|
19.0
|
1.0
|
N
|
C:SER12
|
5.0
|
23.6
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1dqt
Go back to
Chlorine Binding Sites List in 1dqt
Chlorine binding site 4 out
of 4 in the The Crystal Structure of Murine CTLA4 (CD152)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Crystal Structure of Murine CTLA4 (CD152) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl204
b:47.7
occ:1.00
|
O
|
C:HOH932
|
2.5
|
27.8
|
1.0
|
N
|
D:VAL8
|
3.1
|
20.8
|
1.0
|
O
|
D:VAL8
|
3.3
|
23.4
|
1.0
|
O
|
D:HOH521
|
3.5
|
27.4
|
1.0
|
N
|
D:SER7
|
3.6
|
22.5
|
1.0
|
CB
|
D:SER7
|
3.8
|
22.2
|
1.0
|
CA
|
D:VAL8
|
3.8
|
21.9
|
1.0
|
CG2
|
B:VAL8
|
3.9
|
20.3
|
1.0
|
CB
|
D:VAL8
|
3.9
|
21.7
|
1.0
|
CA
|
D:SER7
|
4.0
|
22.9
|
1.0
|
NE2
|
B:GLN111
|
4.0
|
29.7
|
1.0
|
C
|
D:SER7
|
4.0
|
21.9
|
1.0
|
C
|
D:VAL8
|
4.0
|
21.7
|
1.0
|
CB
|
D:PRO6
|
4.3
|
22.1
|
1.0
|
C
|
D:PRO6
|
4.4
|
23.2
|
1.0
|
O
|
C:HOH537
|
4.5
|
23.7
|
1.0
|
CA
|
D:PRO6
|
4.6
|
22.3
|
1.0
|
CG2
|
D:VAL8
|
4.7
|
21.4
|
1.0
|
OG
|
D:SER7
|
4.8
|
27.2
|
1.0
|
OH
|
B:TYR113
|
4.9
|
22.4
|
1.0
|
CB
|
C:LEU10
|
4.9
|
20.1
|
1.0
|
CD1
|
C:LEU10
|
5.0
|
19.3
|
1.0
|
|
Reference:
D.A.Ostrov,
W.Shi,
J.C.Schwartz,
S.C.Almo,
S.G.Nathenson.
Structure of Murine Ctla-4 and Its Role in Modulating T Cell Responsiveness. Science V. 290 816 2000.
ISSN: ISSN 0036-8075
PubMed: 11052947
DOI: 10.1126/SCIENCE.290.5492.816
Page generated: Fri Jul 19 21:38:05 2024
|