Chlorine in PDB 1ebh: Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution

Enzymatic activity of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution

All present enzymatic activity of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution:
4.2.1.11;

Protein crystallography data

The structure of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution, PDB code: 1ebh was solved by J.E.Wedekind, G.H.Reed, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 1.90
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	72.500, 73.200, 89.100, 90.00, 104.40, 90.00
*R / R_free (%)*	n/a / n/a

Other elements in 1ebh:

The structure of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution (pdb code 1ebh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution, PDB code: 1ebh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1ebh

Go back to

Chlorine Binding Sites List in 1ebh

Chlorine binding site 1 out of 2 in the Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl437 b:31.8 occ:1.00	NE	A:ARG374	3.1	10.7	1.0
	O	A:HOH443	3.1	29.6	1.0
	N	A:SER375	3.3	13.8	1.0
	O	A:HOH479	3.3	28.5	1.0
	NH2	A:ARG374	3.6	11.6	1.0
	CA	A:ARG374	3.7	13.2	1.0
	CA	A:GLY37	3.7	17.8	0.4
	CZ	A:ARG374	3.8	11.2	1.0
	OG	A:SER375	3.9	29.0	1.0
	C	A:ARG374	3.9	13.7	1.0
	O	A:HOH586	4.0	29.8	1.0
	CB	A:ARG374	4.1	13.2	1.0
	NZ	A:LYS345	4.1	10.9	1.0
	O	A:HOH535	4.1	84.2	1.0
	CD	A:ARG374	4.2	10.9	1.0
	CB	A:SER375	4.3	15.4	1.0
	CA	A:SER375	4.3	13.8	1.0
	CE	A:LYS345	4.3	12.9	1.0
	O	A:HOH691	4.6	79.2	1.0
	N	A:ALA38	4.6	25.7	0.4
	C	A:GLY37	4.7	22.8	0.4
	CG	A:ARG374	4.8	22.8	1.0
	N	A:GLY37	4.8	14.7	0.4
	O	A:HIS373	4.9	13.2	1.0
	O	A:HOH487	4.9	21.7	1.0
	N	A:ARG374	5.0	12.8	1.0

Chlorine binding site 2 out of 2 in 1ebh

Go back to

Chlorine Binding Sites List in 1ebh

Chlorine binding site 2 out of 2 in the Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Octahedral Coordination at the High Affinity Metal Site in Enolase; Crystallographic Analysis of the Mg++-Enzyme From Yeast at 1.9 Angstroms Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl437 b:36.8 occ:1.00	NE	B:ARG374	3.0	11.4	1.0
	N	B:SER375	3.1	14.1	1.0
	CA	B:GLY37	3.4	14.1	0.4
	O	B:HOH466	3.5	24.5	1.0
	CA	B:ARG374	3.6	11.1	1.0
	NH2	B:ARG374	3.6	12.0	1.0
	O	B:HOH640	3.7	33.1	1.0
	OG	B:SER375	3.8	34.9	1.0
	C	B:ARG374	3.8	13.4	1.0
	CZ	B:ARG374	3.8	12.1	1.0
	CB	B:ARG374	3.9	11.2	1.0
	CD	B:ARG374	4.0	10.2	1.0
	O	B:HOH459	4.1	38.0	1.0
	CB	B:SER375	4.2	15.4	1.0
	CA	B:SER375	4.2	15.2	1.0
	NZ	B:LYS345	4.3	11.9	1.0
	N	B:ALA38	4.4	21.6	0.4
	C	B:GLY37	4.4	18.8	0.4
	N	B:GLY37	4.4	12.8	0.4
	CE	B:LYS345	4.5	12.7	1.0
	CG	B:ARG374	4.6	17.3	1.0
	O	B:HIS373	4.8	9.8	1.0
	N	B:ARG374	4.8	9.0	1.0
	O	B:SER36	5.0	11.0	0.5
	O	B:SER36	5.0	29.3	0.5
	O	B:ARG374	5.0	13.3	1.0

Reference:

J.E.Wedekind, G.H.Reed, I.Rayment. Octahedral Coordination at the High-Affinity Metal Site in Enolase: Crystallographic Analysis of the Mgii--Enzyme Complex From Yeast at 1.9 A Resolution. Biochemistry V. 34 4325 1995.
ISSN: ISSN 0006-2960
PubMed: 7703246
DOI: 10.1021/BI00013A022

Page generated: Fri Jul 19 21:47:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy