Chlorine in PDB 1ebo: Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain

The structure of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo was solved by W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	171.702, 32.691, 168.863, 90.00, 119.23, 90.00
R / Rfree (%)	23.9 / 25.6

The structure of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Chlorine atom in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain (pdb code 1ebo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl151 b:39.6 occ:1.00 CB D:SER82 3.3 31.2 1.0 CB F:SER82 3.6 43.2 1.0 ND2 D:ASN85 3.7 56.8 1.0 ND2 E:ASN85 3.7 34.1 1.0 ND2 F:ASN85 3.8 20.0 1.0 OG E:SER82 3.8 24.2 1.0 CA D:SER82 3.9 25.1 1.0 CB E:SER82 3.9 24.2 1.0 CA E:SER82 4.0 18.3 1.0 CA F:SER82 4.0 19.9 1.0 CB D:ASN85 4.1 56.8 1.0 CB E:ASN85 4.3 34.1 1.0 CG D:ASN85 4.3 56.8 1.0 CB F:ASN85 4.3 20.0 1.0 CG E:ASN85 4.4 34.1 1.0 O D:SER82 4.4 25.1 1.0 OG D:SER82 4.5 31.2 1.0 OG F:SER82 4.5 43.2 1.0 O E:SER82 4.5 18.3 1.0 O F:SER82 4.6 19.9 1.0 CG F:ASN85 4.6 20.0 1.0 C D:SER82 4.7 25.1 1.0 C E:SER82 4.8 18.3 1.0 C F:SER82 4.8 19.9 1.0 N D:SER82 5.0 25.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl150 b:39.6 occ:1.00 CB C:SER82 3.4 23.7 1.0 ND2 B:ASN85 3.5 35.8 1.0 ND2 A:ASN85 3.6 19.8 1.0 CB B:SER82 3.6 51.5 1.0 CB A:SER82 3.8 34.2 1.0 CA C:SER82 3.8 11.3 1.0 ND2 C:ASN85 3.9 20.6 1.0 CA B:SER82 4.0 24.2 1.0 CA A:SER82 4.0 19.1 1.0 CB A:ASN85 4.2 19.8 1.0 CB B:ASN85 4.2 35.8 1.0 CB C:ASN85 4.2 20.6 1.0 CG B:ASN85 4.3 35.8 1.0 CG A:ASN85 4.4 19.8 1.0 OG C:SER82 4.4 23.7 1.0 O C:SER82 4.4 11.3 1.0 OG A:SER82 4.5 34.2 1.0 CG C:ASN85 4.5 20.6 1.0 O B:SER82 4.5 24.2 1.0 OG B:SER82 4.5 51.5 1.0 O A:SER82 4.6 19.1 1.0 C C:SER82 4.6 11.3 1.0 C B:SER82 4.8 24.2 1.0 C A:SER82 4.8 19.1 1.0 N C:SER82 4.9 11.3 1.0

W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley. Crystal Structure of the Ebola Virus Membrane Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain. Mol.Cell V. 2 605 1998.
ISSN: ISSN 1097-2765
PubMed: 9844633
DOI: 10.1016/S1097-2765(00)80159-8