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Chlorine in PDB 1ebo: Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain

Protein crystallography data

The structure of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo was solved by W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 171.702, 32.691, 168.863, 90.00, 119.23, 90.00
R / Rfree (%) 23.9 / 25.6

Other elements in 1ebo:

The structure of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain (pdb code 1ebo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain, PDB code: 1ebo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1ebo

Go back to Chlorine Binding Sites List in 1ebo
Chlorine binding site 1 out of 2 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl151

b:39.6
occ:1.00
CB D:SER82 3.3 31.2 1.0
CB F:SER82 3.6 43.2 1.0
ND2 D:ASN85 3.7 56.8 1.0
ND2 E:ASN85 3.7 34.1 1.0
ND2 F:ASN85 3.8 20.0 1.0
OG E:SER82 3.8 24.2 1.0
CA D:SER82 3.9 25.1 1.0
CB E:SER82 3.9 24.2 1.0
CA E:SER82 4.0 18.3 1.0
CA F:SER82 4.0 19.9 1.0
CB D:ASN85 4.1 56.8 1.0
CB E:ASN85 4.3 34.1 1.0
CG D:ASN85 4.3 56.8 1.0
CB F:ASN85 4.3 20.0 1.0
CG E:ASN85 4.4 34.1 1.0
O D:SER82 4.4 25.1 1.0
OG D:SER82 4.5 31.2 1.0
OG F:SER82 4.5 43.2 1.0
O E:SER82 4.5 18.3 1.0
O F:SER82 4.6 19.9 1.0
CG F:ASN85 4.6 20.0 1.0
C D:SER82 4.7 25.1 1.0
C E:SER82 4.8 18.3 1.0
C F:SER82 4.8 19.9 1.0
N D:SER82 5.0 25.1 1.0

Chlorine binding site 2 out of 2 in 1ebo

Go back to Chlorine Binding Sites List in 1ebo
Chlorine binding site 2 out of 2 in the Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Ebola Virus Membrane-Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl150

b:39.6
occ:1.00
CB C:SER82 3.4 23.7 1.0
ND2 B:ASN85 3.5 35.8 1.0
ND2 A:ASN85 3.6 19.8 1.0
CB B:SER82 3.6 51.5 1.0
CB A:SER82 3.8 34.2 1.0
CA C:SER82 3.8 11.3 1.0
ND2 C:ASN85 3.9 20.6 1.0
CA B:SER82 4.0 24.2 1.0
CA A:SER82 4.0 19.1 1.0
CB A:ASN85 4.2 19.8 1.0
CB B:ASN85 4.2 35.8 1.0
CB C:ASN85 4.2 20.6 1.0
CG B:ASN85 4.3 35.8 1.0
CG A:ASN85 4.4 19.8 1.0
OG C:SER82 4.4 23.7 1.0
O C:SER82 4.4 11.3 1.0
OG A:SER82 4.5 34.2 1.0
CG C:ASN85 4.5 20.6 1.0
O B:SER82 4.5 24.2 1.0
OG B:SER82 4.5 51.5 1.0
O A:SER82 4.6 19.1 1.0
C C:SER82 4.6 11.3 1.0
C B:SER82 4.8 24.2 1.0
C A:SER82 4.8 19.1 1.0
N C:SER82 4.9 11.3 1.0

Reference:

W.Weissenhorn, A.Carfi, K.H.Lee, J.J.Skehel, D.C.Wiley. Crystal Structure of the Ebola Virus Membrane Fusion Subunit, GP2, From the Envelope Glycoprotein Ectodomain. Mol.Cell V. 2 605 1998.
ISSN: ISSN 1097-2765
PubMed: 9844633
DOI: 10.1016/S1097-2765(00)80159-8
Page generated: Sat Dec 12 08:34:37 2020

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