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Chlorine in PDB 1edb: Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site

Enzymatic activity of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site

All present enzymatic activity of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site:
3.8.1.5;

Protein crystallography data

The structure of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site, PDB code: 1edb was solved by K.H.G.Verschueren, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.01
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.400, 72.900, 41.400, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site (pdb code 1edb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site, PDB code: 1edb:

Chlorine binding site 1 out of 1 in 1edb

Go back to Chlorine Binding Sites List in 1edb
Chlorine binding site 1 out of 1 in the Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions: Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl600

b:6.0
occ:1.00
 O A:HOH431 3.1 11.8 1.0
NE1 A:TRP175 3.1 4.4 1.0
NE1 A:TRP125 3.4 2.1 1.0
CA A:PRO223 3.4 7.0 1.0
N A:PRO223 3.6 6.6 1.0
CG A:GLU56 3.7 3.7 1.0
CG2 A:VAL226 3.7 2.1 1.0
CD1 A:TRP125 3.7 2.7 1.0
CB A:PRO223 3.7 8.1 1.0
C A:PHE222 3.9 4.8 1.0
CB A:GLU56 3.9 3.2 1.0
O A:PHE222 4.0 5.3 1.0
CD1 A:TRP175 4.1 5.0 1.0
CE1 A:PHE172 4.1 6.3 1.0
CE2 A:TRP175 4.1 4.3 1.0
CG A:PRO223 4.2 8.7 1.0
CD A:PRO223 4.3 7.3 1.0
CB A:PHE222 4.3 3.0 1.0
CZ2 A:TRP175 4.5 3.6 1.0
CD A:GLU56 4.6 5.4 1.0
CE2 A:TRP125 4.7 3.6 1.0
CB A:VAL226 4.7 3.9 1.0
C A:PRO223 4.7 6.1 1.0
OE2 A:GLU56 4.7 6.0 1.0
CA A:PHE222 4.8 3.3 1.0
OD2 A:ASP124 4.8 6.8 1.0
CZ A:PHE172 4.9 5.5 1.0
O A:HOH483 5.0 23.5 0.5
CD1 A:PHE172 5.0 6.8 1.0
O A:PRO223 5.0 5.8 1.0

Reference:

K.H.Verschueren, J.Kingma, H.J.Rozeboom, K.H.Kalk, D.B.Janssen, B.W.Dijkstra. Crystallographic and Fluorescence Studies of the Interaction of Haloalkane Dehalogenase with Halide Ions. Studies with Halide Compounds Reveal A Halide Binding Site in the Active Site. Biochemistry V. 32 9031 1993.
ISSN: ISSN 0006-2960
PubMed: 8369276
DOI: 10.1021/BI00086A008
Page generated: Fri Jul 19 21:47:44 2024

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