Chlorine in PDB 1f07: Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum

The structure of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum, PDB code: 1f07 was solved by S.Shima, E.Warkentin, W.Grabarse, R.K.Thauer, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	162.800, 128.200, 109.200, 90.00, 131.40, 90.00
R / Rfree (%)	20.8 / 23.7

The binding sites of Chlorine atom in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum (pdb code 1f07). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum, PDB code: 1f07:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl324 b:30.3 occ:1.00 HE B:ARG1068 2.4 34.5 1.0 HD21 B:ASN1041 2.5 34.5 1.0 NE A:ARG68 3.2 21.0 1.0 NE B:ARG1068 3.2 25.4 1.0 HH11 B:ARG1068 3.4 34.5 1.0 ND2 B:ASN1041 3.5 24.0 1.0 ND2 A:ASN41 3.5 20.3 1.0 CD1 B:TYR1043 3.8 21.0 1.0 CD1 A:TYR43 3.8 19.2 1.0 CD A:ARG68 4.0 22.9 1.0 HD22 B:ASN1041 4.0 34.5 1.0 CD B:ARG1068 4.0 24.7 1.0 NH2 A:ARG68 4.1 24.5 1.0 CZ A:ARG68 4.1 23.5 1.0 NH1 B:ARG1068 4.1 24.6 1.0 CZ B:ARG1068 4.1 26.1 1.0 OD1 B:ASN1041 4.3 23.4 1.0 CG B:ASN1041 4.3 22.1 1.0 CG A:ASN41 4.4 20.9 1.0 OD1 A:ASN41 4.4 24.3 1.0 CE1 A:TYR43 4.4 17.8 1.0 CE1 B:TYR1043 4.5 21.4 1.0 CG B:TYR1043 4.7 20.5 1.0 CB B:TYR1043 4.7 20.4 1.0 CG A:TYR43 4.7 18.0 1.0 CG2 A:ILE72 4.7 19.4 1.0 CB A:TYR43 4.8 19.1 1.0 CG2 B:ILE1072 4.9 27.9 1.0 HH12 B:ARG1068 5.0 34.5 1.0 H B:TYR1043 5.0 34.5 1.0

Chlorine binding site 2 out of 2 in the Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Coenzyme F420 Dependent Tetrahydromethanopterin Reductase From Methanobacterium Thermoautotrophicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl323 b:30.4 occ:1.00 HE D:ARG3068 2.3 34.5 1.0 HE C:ARG2068 2.3 34.5 1.0 HD21 C:ASN2041 2.5 34.5 1.0 HD21 D:ASN3041 2.6 34.5 1.0 NE C:ARG2068 3.1 23.0 1.0 NE D:ARG3068 3.1 21.4 1.0 HH22 D:ARG3068 3.2 34.5 1.0 HH12 C:ARG2068 3.3 34.5 1.0 ND2 C:ASN2041 3.4 18.7 1.0 ND2 D:ASN3041 3.5 23.0 1.0 CD1 C:TYR2043 3.7 18.9 1.0 CD1 D:TYR3043 3.8 18.6 1.0 CD C:ARG2068 3.9 22.4 1.0 CD D:ARG3068 3.9 20.4 1.0 HD22 C:ASN2041 4.0 34.5 1.0 NH2 D:ARG3068 4.0 20.7 1.0 CZ C:ARG2068 4.0 24.1 1.0 NH1 C:ARG2068 4.0 23.6 1.0 CZ D:ARG3068 4.0 20.4 1.0 HD22 D:ASN3041 4.0 34.5 1.0 OD1 C:ASN2041 4.3 21.8 1.0 CG C:ASN2041 4.3 22.0 1.0 OD1 D:ASN3041 4.3 25.3 1.0 CG D:ASN3041 4.3 25.2 1.0 CE1 C:TYR2043 4.5 19.9 1.0 CE1 D:TYR3043 4.5 17.1 1.0 CG C:TYR2043 4.6 19.8 1.0 CB C:TYR2043 4.7 18.5 1.0 CG D:TYR3043 4.7 19.9 1.0 CB D:TYR3043 4.8 18.6 1.0 CG2 C:ILE2072 4.8 20.5 1.0 CG2 D:ILE3072 4.8 20.2 1.0 HH11 C:ARG2068 4.9 34.5 1.0 HH21 D:ARG3068 4.9 34.5 1.0

S.Shima, E.Warkentin, W.Grabarse, M.Sordel, M.Wicke, R.K.Thauer, U.Ermler. Structure of Coenzyme F(420) Dependent Methylenetetrahydromethanopterin Reductase From Two Methanogenic Archaea. J.Mol.Biol. V. 300 935 2000.
ISSN: ISSN 0022-2836
PubMed: 10891279
DOI: 10.1006/JMBI.2000.3909