Atomistry » Chlorine » PDB 1eyz-1g0g » 1f6d
Atomistry »
  Chlorine »
    PDB 1eyz-1g0g »
      1f6d »

Chlorine in PDB 1f6d: The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.

Enzymatic activity of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.

All present enzymatic activity of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.:
5.1.3.14;

Protein crystallography data

The structure of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli., PDB code: 1f6d was solved by R.E.Campbell, S.C.Mosimann, M.E.Tanner, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.32 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 91.008, 94.541, 100.970, 90.00, 109.13, 90.00
R / Rfree (%) 19.8 / 27.1

Other elements in 1f6d:

The structure of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. (pdb code 1f6d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli., PDB code: 1f6d:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1f6d

Go back to Chlorine Binding Sites List in 1f6d
Chlorine binding site 1 out of 4 in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1379

b:28.8
occ:1.00
 O A:HOH1384 3.1 9.7 1.0
N A:ASN354 3.1 14.4 1.0
O A:HOH1412 3.2 20.8 1.0
CA A:HIS353 3.7 16.6 1.0
NA A:NA1378 3.8 21.6 1.0
CB A:ASN354 3.8 14.7 1.0
C A:HIS353 3.9 15.0 1.0
CA A:ASN354 4.0 16.3 1.0
CD2 A:HIS353 4.1 16.8 1.0
O A:PRO298 4.1 14.4 1.0
CA A:SER299 4.2 13.7 1.0
O A:HOH1543 4.3 37.9 1.0
CB A:HIS353 4.3 15.9 1.0
O A:ALA352 4.3 19.2 1.0
CG A:HIS353 4.6 16.6 1.0
OG A:SER299 4.6 16.4 1.0
N A:HIS353 4.8 16.9 1.0
C A:PRO298 4.8 14.9 1.0
CB A:SER299 4.9 14.2 1.0
N A:SER299 4.9 14.3 1.0
O A:ASN354 4.9 17.9 1.0
C A:SER299 5.0 14.5 1.0
C A:ALA352 5.0 18.6 1.0

Chlorine binding site 2 out of 4 in 1f6d

Go back to Chlorine Binding Sites List in 1f6d
Chlorine binding site 2 out of 4 in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2379

b:26.4
occ:1.00
 NH1 B:ARG121 2.9 4.0 1.0
NH2 B:ARG121 3.1 6.8 1.0
N B:GLY119 3.1 14.0 1.0
O B:ARG135 3.2 11.5 1.0
O B:HOH2409 3.2 19.8 1.0
CZ B:ARG121 3.4 8.1 1.0
CA B:GLY119 3.7 11.6 1.0
CD2 B:LEU156 3.8 11.3 1.0
C B:ARG135 3.9 10.9 1.0
CE1 B:HIS115 3.9 7.7 1.0
ND1 B:HIS115 4.1 7.8 1.0
O B:HOH2538 4.1 38.7 1.0
C B:ALA118 4.1 17.1 1.0
CA B:GLY139 4.1 18.6 1.0
CA B:ALA118 4.3 17.5 1.0
CB B:ARG135 4.4 13.8 1.0
N B:GLY139 4.4 18.9 1.0
C B:GLY119 4.5 10.3 1.0
CB B:ALA118 4.5 17.8 1.0
N B:THR136 4.6 10.1 1.0
CA B:THR136 4.6 10.9 1.0
CA B:ARG135 4.7 12.7 1.0
NE B:ARG121 4.7 6.3 1.0
N B:LEU120 4.8 9.7 1.0
CG B:LEU156 4.9 15.5 1.0
CG B:ARG135 4.9 17.9 1.0

Chlorine binding site 3 out of 4 in 1f6d

Go back to Chlorine Binding Sites List in 1f6d
Chlorine binding site 3 out of 4 in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl3379

b:34.0
occ:1.00
 O C:HOH3388 3.0 15.1 1.0
NH1 C:ARG121 3.0 15.4 1.0
O C:ARG135 3.1 16.0 1.0
NH2 C:ARG121 3.1 17.0 1.0
N C:GLY119 3.1 22.9 1.0
CZ C:ARG121 3.5 18.6 1.0
CE1 C:HIS115 3.7 11.2 1.0
CA C:GLY119 3.9 20.7 1.0
ND1 C:HIS115 3.9 12.9 1.0
CD2 C:LEU156 4.0 15.5 1.0
C C:ALA118 4.0 24.3 1.0
C C:ARG135 4.0 15.6 1.0
CA C:GLY139 4.1 28.1 1.0
CA C:ALA118 4.1 23.7 1.0
O C:HOH3454 4.2 34.4 1.0
CB C:ALA118 4.3 24.4 1.0
N C:GLY139 4.5 26.5 1.0
C C:GLY119 4.6 19.4 1.0
CB C:ARG135 4.7 20.0 1.0
CA C:THR136 4.8 14.6 1.0
N C:THR136 4.8 14.8 1.0
N C:LEU120 4.8 18.4 1.0
NE C:ARG121 4.8 18.0 1.0
CA C:ARG135 4.9 16.5 1.0
CG C:ARG135 4.9 21.5 1.0
CG C:LEU156 4.9 19.1 1.0
NE2 C:HIS115 4.9 9.4 1.0

Chlorine binding site 4 out of 4 in 1f6d

Go back to Chlorine Binding Sites List in 1f6d
Chlorine binding site 4 out of 4 in the The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of Udp-N-Acetylglucosamine 2-Epimerase From E. Coli. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl4379

b:28.2
occ:1.00
 O D:HOH4383 3.0 12.3 1.0
N D:ASN354 3.3 9.2 1.0
O D:HOH4418 3.3 23.9 1.0
CA D:HIS353 3.8 11.7 1.0
CB D:ASN354 4.0 9.0 1.0
CD2 D:HIS353 4.0 15.5 1.0
C D:HIS353 4.0 9.4 1.0
O D:PRO298 4.1 14.8 1.0
CA D:SER299 4.2 17.0 1.0
O D:HOH4487 4.2 35.9 1.0
CA D:ASN354 4.2 10.1 1.0
O D:ALA352 4.4 12.2 1.0
CB D:HIS353 4.4 13.2 1.0
CG D:HIS353 4.5 12.8 1.0
NA D:NA4378 4.8 17.1 1.0
OG D:SER299 4.8 21.7 1.0
C D:PRO298 4.8 17.1 1.0
N D:HIS353 4.9 12.2 1.0
CB D:SER299 4.9 18.3 1.0
N D:SER299 4.9 16.3 1.0
C D:SER299 4.9 16.2 1.0
O D:SER299 5.0 14.5 1.0

Reference:

R.E.Campbell, S.C.Mosimann, M.E.Tanner, N.C.Strynadka. The Structure of Udp-N-Acetylglucosamine 2-Epimerase Reveals Homology to Phosphoglycosyl Transferases. Biochemistry V. 39 14993 2000.
ISSN: ISSN 0006-2960
PubMed: 11106477
DOI: 10.1021/BI001627X
Page generated: Sat Dec 12 08:35:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy